Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00004 ATGGCTTCTACAGAGGGTTTGGTGCCCATAACTAGAGCCTTTCTGTCGTCTTACTACGACAAACATCCCTTTACTCCTCTTTCTCCTGATGTCTCCCTCCTTTCTTCTCAGCTTCGTACCATGGCCACTGATTTGCTCACTCACCACCCTCCTACCCATGGAGAAAGCACATTAATAAATGAAGCCAACAGTCAACCTCCGCATAAGATTGACGAAAACATGTGGAAGAATCGAGAATATATTGAAGAAACAATTTTTTTACTTGAAGGATCTAATTGGCCAGAGGGGCTGAAGCAGGAGTCCACACCTGACAATGTTGAATTTTCCATTATGTTTGGGAAGCTGCAAGATAAACTTCGCCATACTTTGAAGAGTTTGGAATCATTCCAAATAAAAAATGCTGAACATGTATTTAACACAGTTATGACATATCTGCCTCAAGATTTTCGAGGAACTCTCCTCAGACAACAACGGGAACGCTCAGAGAGGAATAAGCAAGCAGAGGTGGATGCTTTGGTAAATTCTGGTGGTAGTATACGTGATCGATATGCTCTTCTGTGGAAACAACAGATGGACAGGAGAAGGCAATTAGCTCAGCTTGGCTCTGCAACAGGAGTCTATAAAACCCTCGTCAAGTACCTAGTTGGAGTTCCCGAGGTATTGCTTGATTTTACAAGGCAGATTAATGATGATGACGGGCCCATGGAGGAGCAGCGTCATCGCTATGGACCACCATTATACAGCCTCACCTCAATGATTCTTTCTGTCCGATTCTTCATTTCATTATCATGGGCACGATATGGGTCTAAGAAATTAAAAAGGGAACAGTTAGCTGTCTTGGAGCAAGCTGTTGATGTCTATACCATGGAGTTCGAGAGGTTCATCTCATTTATTAGTGGGGTCTTTGCAAACTCGCCGTTCTTCATTCCAGCAGATGTTGCTGGTGCAATGGAAGCAAGGAAACATGACGATTACAAAGAGATAAGTGTTCCAGCTGGAAAAACTTTTGAGGTTATACTCTCAGTGGACTCAGTAAACTCGTATATTGCATGGGATTTTTCTTTAGTACAAGGCAAGATAAATATGGATATTGGATTTAGTTTGGAGTTTGCAAGTCCTACTGGGGAAAAGATTCTGATGTTGCCTTACCACCGATACGAGTCTGACCAAGGGAACTTCTGCACATTAATGGCCGGAAGCTATAAACTGATATGGGACAACACACATTCAACTTTTTTTAGAAAGGTGCTACGGTATAAGGTAGATTGTATACCTCCTGTTGCTGAACCTGCGCAAGATTGA 1302 0.4247 MASTEGLVPITRAFLSSYYDKHPFTPLSPDVSLLSSQLRTMATDLLTHHPPTHGESTLINEANSQPPHKIDENMWKNREYIEETIFLLEGSNWPEGLKQESTPDNVEFSIMFGKLQDKLRHTLKSLESFQIKNAEHVFNTVMTYLPQDFRGTLLRQQRERSERNKQAEVDALVNSGGSIRDRYALLWKQQMDRRRQLAQLGSATGVYKTLVKYLVGVPEVLLDFTRQINDDDGPMEEQRHRYGPPLYSLTSMILSVRFFISLSWARYGSKKLKREQLAVLEQAVDVYTMEFERFISFISGVFANSPFFIPADVAGAMEARKHDDYKEISVPAGKTFEVILSVDSVNSYIAWDFSLVQGKINMDIGFSLEFASPTGEKILMLPYHRYESDQGNFCTLMAGSYKLIWDNTHSTFFRKVLRYKVDCIPPVAEPAQD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00004 433 PANTHER RETINAL-BINDING PROTEIN 1 432 - -
Trre15g00004 433 MobiDBLite consensus disorder prediction 53 67 - -
Trre15g00004 433 MobiDBLite consensus disorder prediction 49 68 - -
Trre15g00004 433 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 323 428 IPR036598 -
Trre15g00004 433 Gene3D GOLD domain 301 423 - -
Trre15g00004 433 ProSiteProfiles GOLD domain profile. 321 423 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00004 Trre-Chr15 113792 125012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00004 - - gmx:100795582 751.895