Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05307 ATGTTGAGAATTGCAGAAACGAAGCTCAAAGAAGGAGGAACAGCACCATCACCATCAACAACAACAGTAGCAGAAACCGTTACTGTGTTAAACATTCAAATTGTACCAACAAACAATAAGTGTAAACCTAGAGTCTGTTATTGGGAGATAAGATATATGGATAACAATTCTTTAGTTTTAGATGATACTTCGGTTACTATAGCAGAACAACCATTAGTCATTGGTCAAGAGTTTCCAGATGTGGAAACCTGCAGAAGAACATTGAAAGATATTGCCATAGCTATGCATTTTGATCTTCGGATAGTTAAGTCAGATCGCAGTCGTTTTATAGCAAAGTGCTCCAAAGAAGGGTGCCCATGGCGTGTCCATGTAGCCAAATGTCCTGGTGTTCCTACTTTTACTATAAGAACCCTGCAAGGGGACCACACTTGTGAGGGAGTTCGCAACCTTCACCATCAGCAGGCATCAGTAGGTTGGGTTGCAAGATCTGTAGAATCACGCATTCGAGATAATCCACAATACAAACCAAGGGAAATACTGCAAGATATTCGTGATCAGCACGGAGTTGCCGTTTCTTACATGCAAGCTTGGCGAGGTAAGGAACGGAGCATGGCTGCGCTTCATGGAACATTTGAAGAAGGTTACCGTCTTCTCCCTGCATACTGTGAGCAAATAATGAAAACAAACCCTGGTAGCATTGCATCTGTTGGTGCCACTGGGCAAGAAAATTGTTTTCAACGGTTGTTTATTTCTTATCGTGCATCAATTTATGGGTTTATAAATGCTTGTAGACCTCTTTTAGAGCTTGACAGAGCACATCTTAAAGGAAAATATCTAGGTTCTATACTTTGTGCTGCAGCTGTTGATGCCGACGATGCTTTGTTTCCTTTGGCTATTGCTATTGTTGATACTGAAAGCGATGAAAACTGGATGTGGTTTATGTCGGAATTACGGAAACTTCTTGGAGTAAACACCGACAACATGCCTAGACTTACAATACTATCGGAAAGGCAAAGGGGCATGGTGGAGGCTGTAGAAACACATTTTCCTAGTGCTTCACATGGTTTCTGTCTGCGTTATGTTAGCGAAAATTTCCGCGATACATTTAAAAACACAAAGTTAGTGAACATCTTTTGGAATGCTGTTTATGCCCTTACAGCTGCTGAATTTGAAAGCAAGATTACTGAGATGATAGAGGTTTCCCAGGATGTTATATCATGGTTTCAACAGTTCCCTCCCTACCTTTGGGCTGTTGCATACTTTGATGGTGTTCGATATGGCCATTTCACACTTGGGGTAACTGAATTGTTGTATAACTGGGCCCTAGAATGTCATGAGCTCCCTGTAGTGCAGATGATGGAATACATCCGCCAGCAGATGACATGTTGGTTTAACGATCGGAGAGATGTGGGCATGGGGTGGACATCAATTCTTGTACCTTCTGCTGAGAAGCGGATTTCGGAGGCAATAGCTGATGCTCATTGCTACCAAGTACTCCGGGCAAATGAAGTTGAGTTTGAAATTGTGTCTACTGAAAGAACTAATATTGTGGATATACGAAGTCGTGAGTGCTCTTGTCGCCGATGGCAGTTGTATGGTTTACCTTGTGCTCATGCTGCTGCTGCTCTTATTTCTTGTGGACACAATGCCCATCTATTTGCTGAACCATGTTTCACTGTACAAAGTTACAGAATGGCCTATTCGCAGATGATAAATCCTATTCCAGACAAGAGTCAATGGAGGGAACATGGAGAAGGAGCAGAAGGTGGAGGAGGTGCAAGGGTTGATATTGTAATTCGCCCACCAAAGACTCGCCGACCCCCCGGAAGGCCTAAAAAGAAGGTTCTGAGAGTAGAGAACTTCAAGCGTCCCAAAAGGGTTGTCCAATGTGGTCGCTGCCATATGTTAGGACATTCTCAAAAGAAATGCACAATGCCCATTTGA 1944 0.429 MLRIAETKLKEGGTAPSPSTTTVAETVTVLNIQIVPTNNKCKPRVCYWEIRYMDNNSLVLDDTSVTIAEQPLVIGQEFPDVETCRRTLKDIAIAMHFDLRIVKSDRSRFIAKCSKEGCPWRVHVAKCPGVPTFTIRTLQGDHTCEGVRNLHHQQASVGWVARSVESRIRDNPQYKPREILQDIRDQHGVAVSYMQAWRGKERSMAALHGTFEEGYRLLPAYCEQIMKTNPGSIASVGATGQENCFQRLFISYRASIYGFINACRPLLELDRAHLKGKYLGSILCAAAVDADDALFPLAIAIVDTESDENWMWFMSELRKLLGVNTDNMPRLTILSERQRGMVEAVETHFPSASHGFCLRYVSENFRDTFKNTKLVNIFWNAVYALTAAEFESKITEMIEVSQDVISWFQQFPPYLWAVAYFDGVRYGHFTLGVTELLYNWALECHELPVVQMMEYIRQQMTCWFNDRRDVGMGWTSILVPSAEKRISEAIADAHCYQVLRANEVEFEIVSTERTNIVDIRSRECSCRRWQLYGLPCAHAAAALISCGHNAHLFAEPCFTVQSYRMAYSQMINPIPDKSQWREHGEGAEGGGGARVDIVIRPPKTRRPPGRPKKKVLRVENFKRPKRVVQCGRCHMLGHSQKKCTMPI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05307 647 ProSiteProfiles Zinc finger SWIM-type profile. 506 547 IPR007527 GO:0008270
Trre13g05307 647 Pfam MuDR family transposase 72 135 IPR004332 -
Trre13g05307 647 Pfam SWIM zinc finger 513 546 IPR007527 GO:0008270
Trre13g05307 647 SMART 26again6 522 549 IPR006564 GO:0008270
Trre13g05307 647 Pfam MULE transposase domain 267 364 IPR018289 -
Trre13g05307 647 PANTHER POLYPROTEIN, PUTATIVE-RELATED 70 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05307 Trre-Chr13 58170985 58178706 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05307 - - mtr:112416518 1168.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05307 13 58170985 58178706 Trre13g05307 13 58170985 58178706 ECH