Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05304 ATGTATATGGCAACTTTAGGTGCAAATTCAAATATTATTATTAAAAGTGATATAAGAAGGTTTCACAGAACAAAAACACCAACAAGGTTTCAATGTCTTCCTAGTACTAGTAGTACTGTGGCAGTGTTCAAAGTGTTGTCTTTGTCTACTACTACAAAACGCTTGCATTTCTTAAGACATCATCGTCATTCTCGTGGTTTTGTATGTCAATGTCAACATCACAAAGGGAAACATGATTCTTCTCTAATTCCTACAAATATTCCACATGTGATAGGAATTGGGGTCAATAGGATGCTTGTTTCTCTCAAAGATTGGAGAAATTTACGAATAATGGAAGTAGCTGGCTTATTGGTTTGCATTTTAATGGTTGTTCCGTCGGCTGATGCTGTTGATGCTCTCAAAACTTGTGCTTGTTTGCTCAAGGAATGCAGGGTAGAATTGGCTAGGTGTCTTGCAAACCCATCATGTGCTGCCAATATTGCTTGTCTCCAAACATGCAACAATAGACCTGATGAGACTGAATGCCAAATTAAATGCGGGGACGTGTTTGAAAACAAGGTGGTTGATGAATTCAATGAGTGCGCTGTCTCGAGGAAGAAATGTGTACCTAAGAAATCTGATGTGGGAGAATTTCCTGTTCCAAACCCAGATGTCCTCGTGAAGAGCTTTAACATTGCTGATTTTAGTGGCAAGTGGTTCATCACTAGTGGCTTAAATCCTACCTTTGATGCATTTGACTGCCAATTACACGAATTTCACACAGAATCAAATAAACTCGTGGGTAATATAAATTGGAGAATACCAACTCCAGATGGTGGATTTCTTACAAGGTCAGCCGTGCAGAAATTTGAACAAGATCCTGCTAATCCAGGAATCCTCTACAATCATGATAATGAGTATCTTAACTATCAAGATGACTGGTATGTTTTGTCATCTCAAATTGAGAACAAACCGGACGACTATATATTTATATACTATCGAGGCAGAAACGATGCATGGGATGGCTATGGCGGTGCCGTTGTGTACACAAGGAGTGCAGTTTTACCTGAATCTATTATTCCGGAACTTGAAAAAGCGGCAAAGAGTGTAGGAAGAGACTTTAGCACGTTCATTAGAACAGATAATACATGTGGACCAGAGCCTTCGATTGTGGAGAGGATTGAGAAAAAGGTTGAGGAAGGAGAAAAAACCATTGTGAGGGAAGTTGAAGAGTTAGAAGAAGAGGTCGAAAAAGAGGTCGAAAAGGTTGGGAAAACAGAAATGACCTTGTTACAAAGATTGGCAGAAGGATTCAAAGTTTTCCAAGAAGATGAAGAAAATTTCTTAAAAGGATTATCTAAAGAAGAAATGGAGATATTGGAAAGTCTCAAATTGGAAGCTAAGGAAGTAGAAGAGCTCTTTGGAAATGCCTTGCCACTGAGGAAACTAAGATAA 1434 0.3884 MYMATLGANSNIIIKSDIRRFHRTKTPTRFQCLPSTSSTVAVFKVLSLSTTTKRLHFLRHHRHSRGFVCQCQHHKGKHDSSLIPTNIPHVIGIGVNRMLVSLKDWRNLRIMEVAGLLVCILMVVPSADAVDALKTCACLLKECRVELARCLANPSCAANIACLQTCNNRPDETECQIKCGDVFENKVVDEFNECAVSRKKCVPKKSDVGEFPVPNPDVLVKSFNIADFSGKWFITSGLNPTFDAFDCQLHEFHTESNKLVGNINWRIPTPDGGFLTRSAVQKFEQDPANPGILYNHDNEYLNYQDDWYVLSSQIENKPDDYIFIYYRGRNDAWDGYGGAVVYTRSAVLPESIIPELEKAAKSVGRDFSTFIRTDNTCGPEPSIVERIEKKVEEGEKTIVREVEELEEEVEKEVEKVGKTEMTLLQRLAEGFKVFQEDEENFLKGLSKEEMEILESLKLEAKEVEELFGNALPLRKLR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05304 477 Gene3D - 206 388 IPR012674 -
Trre13g05304 477 PANTHER VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC-RELATED 86 466 IPR044682 GO:0010028|GO:0046422
Trre13g05304 477 Coils Coil 384 422 - -
Trre13g05304 477 ProSitePatterns Lipocalin signature. 224 235 IPR022272 -
Trre13g05304 477 Pfam VDE lipocalin domain 135 375 IPR010788 GO:0046422
Trre13g05304 477 Coils Coil 446 466 - -
Trre13g05304 477 CDD lipocalin_VDE 207 381 - -
Trre13g05304 477 SUPERFAMILY Lipocalins 212 381 IPR012674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05304 Trre-Chr13 58158928 58162137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05304 K09839 - gmx:100816085 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05304 13 58158928 58162137 Trre13g05304 13 58158928 58162137 ECH