Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05299 ATGGCAGTACCCGTTGAAGAAGCCATTGCAGCTCTCTCCACATTCTCGCTCGAGGATGAACAACCAGAGGTGCAAGGACCTGGAGTATGGGTGTCAACTGAGAGAGGCGCAACAGAGAGTCCAATAGAATATTGTGATGTTGCGGCATACAGACTATCTCTGTCGGAGGATACGAAAGCTCTGAATCAGTTGAATTCCCTTACCCAGGAGGGAAAGGAGATGGCATCGGTGCTTTACACATATCGTAGTTGTGTCAAAGCACTTCCTCAGCTTCCTGATTCTATGAAGCAAAGCCAAGCTGATTTATATTTGGAAACATATCAAGTTCTGGATTTGGAAATGAGTCGTTTGCGTGAAATTCAGAGATGGCAAGCATCGGCTTCCTCAAAATTAGCTGCTGACATGCAACGTTTTTCTAGGCCTGAGCGGCGCATTAATGGCCCTACAATATCTCATCTTTGGTCTATGTTAAGGTTGTTTGATGTTCTAGTGCAACTTGACCATCTTAAAAATGCTAAGGCAAGCATACCTAATGACTTTTCATGGTACAAAAGGACTTTTACACAAGTTAGTGGTCAGTGGCAAGACACTGATTCAATGAGGGAGGAGTTAGACGATTTACAGATTTTCTTGAGCACAAGATGGGCTATTTTGTTGAATTTGCATGTTGAGATGTTCCGTGTAAACAATGTAGAAGACATTCTTCAAGTTCTTATAGTATTTGTTGTAGAGTCCTTGGAGTTGGACTTTGCACTTCTCTTTCCAGAGCGCCACATTCTTTTGCGTGTTTTGCCTGTTCTTGTTGTCCTAGTGACATCTTCAGAGAAAGATAGCGAGTCTCTGTACAAGAGGGTAAAAATCAACAGACTGATCAATATATTTAAGAACGAAGCAGTTATTCCTGCCTTTCCAGATCTGCATCTCTCTCCAGCTGCGATATTGAAGGAATTATCAACATACTTTCCAAAATTTTCTTCCCAAACTCGCCTTCTCGCCCTTCCAGCACCTCATGAGCTTCCACCTCGTGAAAGACATTATCTAATTGTCAATCATATTGGAGCCATTCGTGCCGAGCATGATGATTTCACAATTCGTTTTGCTTCAGCAATGAATCAGCTGCTGTTGTTGAAGTCCACTGATGGTTCTGATGTTGATTGGAGCAAAGAGGTCAAAGGGAACATGTATGATATGATTGTTGAAGGTTTTCAGCTATTAAGCAGATGGACTGCACGCATTTGGGAACAATGTGCGTGGAAATTTTCTCGACCATGCAAGGACGCATCCCCATCATTCTCTGACTATGAAAAGGTAGTACGATATAATTACAGTGCAGAGGAAAGGAAAGCACTGGTGGAACTTGTTAGCTACATAAAGAGTGTGGGTTCTATGATGCAGCGGTGTGATACACTGGTTGCCGATGCTTTATGGGAAACAATACATGCTGAAGTCCAAGATTTTGTTCAAAACACATTAGCTTCTATGTTGCGGACAACCTTCAGAAAGAAGAAGGATCTCTCTAGGATTCTTTCTGATATGAGGACCCTTTCAGCTGATTGGATGGCTAATACAAACAAGTCAGAATCTGAGTTACAGTCCTCACAGCATGGAGGTGAAGAAAGCAAAGCAAACATATTTTATCCAAGGGCAGTTGCCCCAACTGCTGCTCAGGTGCACTGTCTGCAGTTCTTAATATATGAGGTGGTTTCTGGTGGTAACCTCAGGAGACCAGGTGGACTTTTTGGCAATAGTGGCTCAGAAATCCCAGTTAACGATTTAAAACAGCTGGAAACATTTTTTTACAAACTTGGTTTTTTCCTGCATATTTTAGACTACTCAGTGACTGTTGCCACATTGACAGATCTTGGTTTCTTGTGGTTTAGAGAATTTTATTTGGAGTCTTCACGAGTCATTCAGTTTCCAATCGAATGCTCTCTTCCCTGGATGTTGGTGGATTGTGTACTTGAGTCGCCAAACTCTGGTCTTCTTGAGAGTGTTCTGATGCCATTTGACATCTATAATGATTCAGCTCAGCAAGCCTTGGTGTTGCTGAAGCAACGGTTTCTGTATGATGAAATTGAGGCCGAGGTAGACCATTGTTTTGACATATTTGTTTCCAGACTGTGTGAAACCATTTTCACGTATTACAAAAGTTGGGCAGCAAGTGAATTGCTTGATCCTACATTTATCTTTGCCTCAGACAATGCAGAAAAGTACGCTGTGCATCCTATAAGGTTTAATATGCTGCTAAAAATGACTAGGGTGAAGCTACTTGGAAGGATGATCAACTTGCGAAGTTTGATCACTGAACGGATAAATAAAATTTTCCGTGAAAATATTGAGTTTCTGTTTGATCGTTTTGAGTGTCAAGATCTGTGTGCCATAGTGGAATTAGAGAAGTTGTTGGATGTCTTAAGACATTCCCATGACCTACTGTCAAGGGATCTTTCTGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAACATCTCCCTTGTGTCATTTTCTAGTCGACTGGCCTCACAGATTTGGTCTGAGATGCAAAGTGACTTTTTGCCAAATTTCATCCTCTGCAATACTACTCAACGTTTTATCAGATCATCAAAGACAATTCTTGTTCAAAAGCCATCCATACCCTCTGCTAAGCCTAGTTTCTATTGTGGTACTCAAGATTTAAATTCTGCACATCAAAGTTTTGCGCGACTGCATAGCGGATTCTTTGGGATACCTCACATGTTTTCTATTGTTCGACTTTTGGGATCCCGATCATTACCTTGGCTTATTAGAGCCCTTCTTGATCATATATCAAATAAGATTACGTTGCTTGAACCAATGATAACAGGCTTACAAGAATCCATGCCAAAATCAATTAGCCTTCTTCCTTTTGATGGAGGCGTGACAGGCTGTGTAAGACTTGTTAAAGAACATCTAAACTGGGAGACAAAATCAGAGCTGAAAGCTGAGGTTCTCCATGGTATAAAAGAGATTGGAAGTGTATTATACTGGATGGGACTTCTAGATATTGTGTTGAGAGAAACGGATACAATGAATTTCATGCAAACTGCTCCCTGGCTGGGCTTGCTTCCTGGAGCAGATGGACAAATATTACCTTCTCAAGATGGAGATAGCCCTGTCGTCAGTCTCTTTAAATCTACGGCTGCTGCAATGGTTTCATATCCCGGTTGCCCATCACCTAATTCTTTCCACATCATGTCAAAACAAGCAGAAGCTGCAGATCTTTTATATAAGGCTAACTTGAATACTGGAAGTGTTCTGGAGTATGCGCTTGCTTTTACAAGTGCTGCATTGGATAAATATTGTAGTAAATGGAGTGCTGCGCCCAAGTCAGGCTTCATTGAAATTACAATTTCAAAAGATTTCTACCGAATATACAGTGGTCTCCAAATTGGATACTTGGAAGAGTCTGCCCAAGTACCATCAAGTAGTCCTGAAAGGCTGGGAGATTCAGTTGCTTGGGGGGGATGTACCATAATTTATTTGCTTGGGCAACAGCTGCATTTTGAGCTCTTTGACTTCTCGTATCAGATCCTCAATATCGCAGAAGTGGAAGCTGCGTCTATTGTGCAAACACCGAAGAACTCTCACTTTGCTGTTCAGGGATGGGAAGCCTTATTAGAGGCAATGAAGAAAGCAAGGAGATTAAATAACCATGTATTCTCTATGCTTAAAGCCCGCTGTCCCCTTGAAGAAAAGACAGCCTGTGCTATTAAACAAAGCGGCGCTCCATTACATCGCATAAGATTTGAAAACACAGTTTCAGCGTTTGAAACTCTGCCGCAGAAAGGTGCTTAA 3816 0.4159 MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPIEYCDVAAYRLSLSEDTKALNQLNSLTQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQRWQASASSKLAADMQRFSRPERRINGPTISHLWSMLRLFDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSGQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFVVESLELDFALLFPERHILLRVLPVLVVLVTSSEKDSESLYKRVKINRLINIFKNEAVIPAFPDLHLSPAAILKELSTYFPKFSSQTRLLALPAPHELPPRERHYLIVNHIGAIRAEHDDFTIRFASAMNQLLLLKSTDGSDVDWSKEVKGNMYDMIVEGFQLLSRWTARIWEQCAWKFSRPCKDASPSFSDYEKVVRYNYSAEERKALVELVSYIKSVGSMMQRCDTLVADALWETIHAEVQDFVQNTLASMLRTTFRKKKDLSRILSDMRTLSADWMANTNKSESELQSSQHGGEESKANIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRRPGGLFGNSGSEIPVNDLKQLETFFYKLGFFLHILDYSVTVATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPTFIFASDNAEKYAVHPIRFNMLLKMTRVKLLGRMINLRSLITERINKIFRENIEFLFDRFECQDLCAIVELEKLLDVLRHSHDLLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKTILVQKPSIPSAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHISNKITLLEPMITGLQESMPKSISLLPFDGGVTGCVRLVKEHLNWETKSELKAEVLHGIKEIGSVLYWMGLLDIVLRETDTMNFMQTAPWLGLLPGADGQILPSQDGDSPVVSLFKSTAAAMVSYPGCPSPNSFHIMSKQAEAADLLYKANLNTGSVLEYALAFTSAALDKYCSKWSAAPKSGFIEITISKDFYRIYSGLQIGYLEESAQVPSSSPERLGDSVAWGGCTIIYLLGQQLHFELFDFSYQILNIAEVEAASIVQTPKNSHFAVQGWEALLEAMKKARRLNNHVFSMLKARCPLEEKTACAIKQSGAPLHRIRFENTVSAFETLPQKGA 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05299 1271 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 431 449 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 257 272 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 1127 1143 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 743 773 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 685 707 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 618 636 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 Pfam Cytoplasmic Fragile-X interacting family 394 1230 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 PIRSF CYFIP 1 1271 IPR008081 GO:0030833|GO:0031267
Trre13g05299 1271 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED 3 1262 IPR008081 GO:0030833|GO:0031267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05299 Trre-Chr13 58105068 58122928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05299 K05749 - gmx:100775991 2410.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05299 13 58105068 58122928 Trre13g05299 13 58105068 58122928 ECH