Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04989 ATGGCTGCTAATACAATCACAACAACGGGTTTTCTAACCCGACCCATGTCACCGTTTCACTTCCATTCCCCTCGCTGCTCCATTTCCTCAACACCTAATTCGATTAAAGCAACTTTTGCAGTTCCGAGAAGAAAAGCAATGTCATTCATCTTATCAACTTACATTCTCTCAGACATTACTAGTACAGCCTTAGCACAACAACCTCGTGTGTTCCGTGAATATGTTGATGCATTTGATGGTTATTCATTCAATTACCCATCAAATTGGATTCAAGTACGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAAAATATTTCTGTTGAAGTTTCTTCACCTTCTTCTTCCAATTTCAAGACTGTTCAAGACTTGGGTTCACCTCAAGAAGCTGGGAAGAAAGTTCTTAATCAGTATCTTACCGAGTTTATGTCTACTAGACTCGGTGTTAAACGCGAATCTAATGTTCTTTCCACTTCTTCTAGAGTTGCTGATGATGGCAAATTATACTATCAAGTTGAGGCTAACATAAAGTCATATGCTAGTAGCAATGAGCTTGCTGTTATGCCACAAGACAGGGTGGTGCGTTTGGAATGGGATAGGAGGTATCTTTCTGTTCTAGGAGTTGAAAATGGTCAACTGTACGAGTTGAGATTACAAGTGCCAGAAAATGTCTTTGCGGAAGAGGAGAATGAGCTTCGTCAAGTCATGGCATCGTTTCGAGCAAATAAGAGTATTCGTTAG 756 0.4021 MAANTITTTGFLTRPMSPFHFHSPRCSISSTPNSIKATFAVPRRKAMSFILSTYILSDITSTALAQQPRVFREYVDAFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSNFKTVQDLGSPQEAGKKVLNQYLTEFMSTRLGVKRESNVLSTSSRVADDGKLYYQVEANIKSYASSNELAVMPQDRVVRLEWDRRYLSVLGVENGQLYELRLQVPENVFAEEENELRQVMASFRANKSIR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04989 251 PANTHER - 27 246 - -
Trre13g04989 251 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 66 246 - -
Trre13g04989 251 Pfam PsbP 71 245 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Trre13g04989 251 SUPERFAMILY Mog1p/PsbP-like 72 245 IPR016123 -
Trre13g04989 251 NCBIfam photosystem II reaction center PsbP 49 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04989 Trre-Chr13 56020532 56021538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04989 - - tpra:123890988 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04989 13 56020532 56021538 Trre13g04989 13 56020532 56021538 ECH