Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04987 ATGGCAAGAATGGTGGCATTTCAACAGAATCAACTATCTTTCCCTCCTTTAGCTTCTTCTCTTTCTGATTTCACTGGAACAAGACTTCAAACTCATATTCAGTTGAAAAGAAAAACATGGCAGCCAAAAGGGGCTTTATGTGTAACAGCATCAAGCACAAAGAAAATCCTCATAATGGGAGGTACTAGATTCATTGGTGTGTTTTTGTCTAGGCAACTTATCAAAGAAGGTCACCAGGTAACTTTATTTACAAGAGGAAAAGCACCTATCACTCAACAATTGCCAGGTGAATCAGACACTGATTTTGCTGAATTTTCTTCCAAGATCTTGCATTTGAAAGGAGACAGGAAGGACTATGATTTTGTAAAATCTAGTCTCTCAGCAGAAGGATTTGATGTTGTTTATGACATTAATGGACGAGAGGCAGAAGAAGTTGAACCAATACTGGATGCTCTCCCTAATCTGGAACAGTTCATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATTTATTACCTCATGCCGAGGTTGATGCAGTTGATCCTAAGAGCAGGCACAAGGGAAAGCTTGAAACAGAAAGTTTGTTGCAATCAAAGGATGTTAATTGGACTTCTATAAGGCCAGTTTATATCTATGGACCCTTGAATTACAACCCTGTTGAAGAATGGTTCTTCCACAGATTGAAAGCCGGTCGCCCAATTCCTATTCCCGGCTCAGGAATACAGATAACACAACTTGGTCATGTTAAGGATTTGGCGACAGCATTTCTGAAGGTTCTTGGAAATGATAAGGCCAGCAAGCAGATATTCAACATCTCAGGAGACAAATATGTCACATTTGATGGATTAGCAAAAGCATGTGCTAAGGCCGGTGGGTTCCCTGAGCCAGAGATCGTTCATTACAACCCTAAAGACTTCGATTTTGGGAAAAAGAAGTCATTTCCATTCCGCGACCAGCATTTCTTTGCATCAGTGGAGAAGGCAAAGAGTGTGCTTGGGTTGGAACCTGATTTTGGGCTTGTAGAAGGTCTTACAGATTCGTATAACTTGGACTTCGGTAGAGGAACTTTCCGCAAAGAGGCTGATTTTTCAACAGATGATATAATTCTTGGCAAGAGTCTTGTTAATGTATGA 1137 0.4063 MARMVAFQQNQLSFPPLASSLSDFTGTRLQTHIQLKRKTWQPKGALCVTASSTKKILIMGGTRFIGVFLSRQLIKEGHQVTLFTRGKAPITQQLPGESDTDFAEFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEVDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLAKACAKAGGFPEPEIVHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDFGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04987 378 FunFam Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 52 351 - -
Trre13g04987 378 Pfam NAD dependent epimerase/dehydratase family 56 273 IPR001509 -
Trre13g04987 378 Gene3D - 51 351 - -
Trre13g04987 378 PANTHER UDP-GLUCOSE 4-EPIMERASE 53 360 - -
Trre13g04987 378 CDD SDR_a1 54 307 - -
Trre13g04987 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 347 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04987 Trre-Chr13 56008593 56011097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04987 - - lja:Lj1g3v4790750.1 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04987 13 56008593 56011097 Trre13g04987 13 56008593 56011097 ECH