Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04979 ATGTCCAAAGTTACTACAACTTTTCAACAAGCCTCTAAAAATGGTTTGAACTTAGCAAGAACATGGGCCTTCAATGATGGAGGTTATAAACCCCTTCAAATTTCACCTGGTTCTTATGATGAGGATGTATTCAAGGGATTGGATTTTGTGATATCAGAAGCAGGGAAAAATGGAGTGCAACTCATACTAAGCTTGGTGAATAATTGGAATGATTATGGTGGGAAAAGTCAATATGTGAAATGGGCCAAAGAGAGGGGTGAATCTTTGAACAATGAGGATGATTTCTTCTTGCACCCAGTTGTTAAACAATATTACAAAAACCATATTGCGGCTGTTTTGTCTAGAAATAATACTATTACTGGATTGGTTTATAAGGATGATCCAACCATTTTTGCATGGGAGCTTATGAATGAACCTCGTTGTCAAAGTGACACTTCTGGAAAATCAATTCAGAGCTGGGTGAGTGAAATGGCTCCCTATGTGAAGTCTATTGATAGCAACCATTTACTAGAAATTGGCCTCGAAGGATTTTATGGTCAAACAATGCAAGAAAAGAATCCTAATTTTCAAGTTGGAACGGATTTCATTTCCAATAATCAAGTCGCTGAAATCGATTTCGCCACCATTCATCTCTACCCTGAAACATGGGTATCAAGCTCAGATGAAACTGCTCAAGATGAATTTGTTGACAAGTGGGTTCAAACCCATATTCAAGACTCAAAAGACATTTTAAATAAGCCAATTATTATTACTGAGTTTGGAAAGTCATCAAAATATTCAGGATATAACGTGGATAAGAGGAATAGTTACTTTGAAAAGCTATACAATTTCGTGTACAATAGTGCTAGCAATGGAGGCCCATGTGCTGGTGGGCTTTTCTGGCAGTTTATGGCCCAAGGATTGGATAGTTTTCGTGATGGCTATGAAGTCATACTTGAAGAGAACCCTTCAACTGCTACGGTTATTAGTCAACAATCTACGAGAATGTCAAATCTTAAATATAACTAG 1008 0.373 MSKVTTTFQQASKNGLNLARTWAFNDGGYKPLQISPGSYDEDVFKGLDFVISEAGKNGVQLILSLVNNWNDYGGKSQYVKWAKERGESLNNEDDFFLHPVVKQYYKNHIAAVLSRNNTITGLVYKDDPTIFAWELMNEPRCQSDTSGKSIQSWVSEMAPYVKSIDSNHLLEIGLEGFYGQTMQEKNPNFQVGTDFISNNQVAEIDFATIHLYPETWVSSSDETAQDEFVDKWVQTHIQDSKDILNKPIIITEFGKSSKYSGYNVDKRNSYFEKLYNFVYNSASNGGPCAGGLFWQFMAQGLDSFRDGYEVILEENPSTATVISQQSTRMSNLKYN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04979 335 Pfam Cellulase (glycosyl hydrolase family 5) 5 270 IPR001547 GO:0004553|GO:0071704
Trre13g04979 335 FunFam Mannan endo-1,4-beta-mannosidase 6 1 333 - -
Trre13g04979 335 SUPERFAMILY (Trans)glycosidases 5 314 IPR017853 -
Trre13g04979 335 PANTHER - 2 333 IPR045053 GO:0004553
Trre13g04979 335 Gene3D Glycosidases 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04979 Trre-Chr13 55933369 55935544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04979 2 334 Glycoside Hydrolase AT1G02310 56.012 1.14e-143 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04979 K19355 - gmx:100791612 545.428