Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04977 ATGGGGACTGAAAATCCGGGTCGTCCAAACTTCCCTTCAAGGCCTACTTCTTTGCCTTTTGCTGCTGCACAGACTATGACTACACCTTTTTCATCAATGGGTCCTGTAGCTGGATCAGAGCCTCCTTCTTTCCGACCTACTCCTCCTGCACCTTCTCAAACGCCCACTCCGTTTTCATCGTCTGGACCTGCCGTTAGACCAGGAGCACCCAGTTTTAGACCTGCACCACCAGGCAGGTTCAATGATCCGTCAGTGCCTCCTCCTCCTCCACCATCATCCAATGTCCCGCCAGCGCCGGGTGCTGGATCCTTCCAGCATTTTCCAGCACCACCCTTTTCCTCGACGGTTCAGCCTCCTCTGACACGGCCTCCACCCTTGGGACAACCATCAATTCAACAGCATGCAAGTCAAGCACCTCCCTTTCCTTCATCTGTTCCACCTCAGCCACAGATGCCCTATGTTCAAATGGGATCTCCACCTATGGGTTCAAATGTTCCTCCTCCTCAATTTCAGCCGTCAGTTCCTGGATATGCCCTTATGCAGCCTGGTGCTGAAATGCAACCTCCACCTTTGCATTCCTCTATTCATGCAAATCAAGGAAATTACGGACCTGCACCGCCTGCTGCAGCATCTCCCTTTTTATCCCATCAAGGAGGCTATCCTTCATCACTACCAGTGGCTACTCCAATAGGTGTCCAGCCAACACAGCAACCAGGATATGTACCCCCTACTGGTGCCATTCAGGGCTTGACAGAAGATTTCAGTTCACTCACAATGCAAAACCGTCCTGGAACAATGGATCCATTATTTGATGCTAAAGAACTTCCAAGGCCGTTGGAAGGTGATGTGGAGCCGAAGAATTTGCCTGAGATGTATCCCGCAAATTGCAAACCCAGATATCTACGATTCACTACCAGTGCAATTCCTAGCTCTCAGTCCTTAGCTTCAAGATGGCAACTGCCTCTTGGAGCAGTTGTATGTCCACTTGCTGAATCTCCAGATGGGGAAGAGGTGCCTATAATTAGTTTTGCTCCAGCTAGTGTTGTGCGCTGTAGAAGATGCCGCACATATGTGAACCCTTATGTGACATTTACAGAAGCTGGAAGAAAGTTCCGGTGCAATGTATGCGCCTTGCTTAATGATGTTCCTAGTGAATATTATGCACAGTTAGATGCCACTGGAAAAAGAGTTGATTTGAATCAACGACCCGAGCTTACAAAGGGCACCGTAGAATTTGTTGCCCCCGCTGAGTATATGGTGCGGCCTCCTATGCCCCCAGTATATTTCTTCCTCATTGATGTTTCCATATCCGCCGTTAGAAGTGGCATGATTGAGGTTGCGGCCCAAACTATCAAGTCCTGCTTAGATGAGCTGCCTGGCTTTCCACGGACACAAATAGGGTTTGCAACTTTTGACAGCACTATACATTTTTATAACTTGAAGTCAACCTTGACTCAACCACAGATGTTTGTAGTCTCAGATCTGGATGACATATTTATTCCGCTCCCAGACGATCTTCTTGTTAACTTATCTGAGTCAAGAAGTGTGGTGGAAGCCTTCCTAGATAGTTTGCCAACTATGTTTCAAGATAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCTTTCATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTTCCATCTCTTGGTGTTGGTCGCTTGAAGTTACGAGGAGATGATTCTCGTGTTTATGGGACAGATAAAGAACATGGACTGAGACTGCCTGAAGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAGTACCAGATCTCAGTAAATGTCTATGCATTCAGTGACAAGTACACTGACATAGCCTCCTTAGGAACTTTGGCAAAGTACACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATACATGGGGAGAAATTGAGTCATGAATTAAGGAGAGACCTCACTAGAGAGACTGCATGGGAAGCTGTAATGCGTATCAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTCATGCTAAGGTCCACAGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACTATTTATTTTCAAGTTGCTCTGCTCTATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTGCCAGTAGTTACAGATTTGGCGGATATGTATCGCCTGGCTGATACTGGGGCAGTTGTCTCTCTATTTTCTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTGCAACTAAGAATTGTGAAAGCCCTCAAGGAGTACCGAAATCTTTATGCCGTGCAGCACCGCTTGGCTAACAGAATGATATATCCCGAGTCTTTAAAGTTCCTAATGTTGTATGGCTTAGCTCTTTGTAGATCAACAGCTCTACGTGGAGCATATGGCGATGTTCCACTGGATGATCGATGTGCAGCAGGACATACAATGATGACTCTACCTATAAAAGGATTGTTGAAATTTCTCTATCCTAGCTTGATTCGACTTGATGAATATCTTTTGAAGCCATCTGTACAAGCTGATGATTTCAAAAGTATCGATAGAAGGTTACCTTTGACTGGGGAGACCTTAGACTCTAGAGGCCTTTATATATATGATGACGGCTTCCGGTTTATTATATGGTTTGGTAGGGTGATTTCACCTGATATAGCAAAGAATTTACTCGGGGCAGACTTTGCAGCGGAACTATCAAAGGCTACTCTCAATGAGCATAATAATGAAATGTCAAGGAGGTTGATGAGGGTACTTGAAAAATTAAGAAATGATGATCGTGCGTATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAACCCAAAGAAGGATTCCTCCTTCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATACTGATTGGATGCTACAGATATCCCGACAAGTGCAACACTCGTAA 3057 0.4514 MGTENPGRPNFPSRPTSLPFAAAQTMTTPFSSMGPVAGSEPPSFRPTPPAPSQTPTPFSSSGPAVRPGAPSFRPAPPGRFNDPSVPPPPPPSSNVPPAPGAGSFQHFPAPPFSSTVQPPLTRPPPLGQPSIQQHASQAPPFPSSVPPQPQMPYVQMGSPPMGSNVPPPQFQPSVPGYALMQPGAEMQPPPLHSSIHANQGNYGPAPPAAASPFLSHQGGYPSSLPVATPIGVQPTQQPGYVPPTGAIQGLTEDFSSLTMQNRPGTMDPLFDAKELPRPLEGDVEPKNLPEMYPANCKPRYLRFTTSAIPSSQSLASRWQLPLGAVVCPLAESPDGEEVPIISFAPASVVRCRRCRTYVNPYVTFTEAGRKFRCNVCALLNDVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVAAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNLKSTLTQPQMFVVSDLDDIFIPLPDDLLVNLSESRSVVEAFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISVNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLSHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTIYFQVALLYTASCGERRIRVHTMAVPVVTDLADMYRLADTGAVVSLFSRLAIEKTLSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLANRMIYPESLKFLMLYGLALCRSTALRGAYGDVPLDDRCAAGHTMMTLPIKGLLKFLYPSLIRLDEYLLKPSVQADDFKSIDRRLPLTGETLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKATLNEHNNEMSRRLMRVLEKLRNDDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYTDWMLQISRQVQHS 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04977 1018 Gene3D - 294 407 - -
Trre13g04977 1018 Pfam Sec23/Sec24 helical domain 760 863 IPR006900 GO:0006886|GO:0006888|GO:0030127
Trre13g04977 1018 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 877 1016 IPR036180 -
Trre13g04977 1018 MobiDBLite consensus disorder prediction 184 216 - -
Trre13g04977 1018 SUPERFAMILY vWA-like 423 663 IPR036465 -
Trre13g04977 1018 CDD Sec24-like 423 664 IPR041742 GO:0006886|GO:0006888|GO:0030127
Trre13g04977 1018 FunFam protein transport protein Sec24D isoform X1 425 662 - -
Trre13g04977 1018 MobiDBLite consensus disorder prediction 1 34 - -
Trre13g04977 1018 Gene3D Sec23/Sec24 helical domain 749 1015 - -
Trre13g04977 1018 Gene3D Severin 868 996 IPR029006 -
Trre13g04977 1018 MobiDBLite consensus disorder prediction 69 97 - -
Trre13g04977 1018 Pfam Sec23/Sec24 trunk domain 423 659 IPR006896 GO:0006886|GO:0006888|GO:0030127
Trre13g04977 1018 MobiDBLite consensus disorder prediction 140 154 - -
Trre13g04977 1018 MobiDBLite consensus disorder prediction 41 56 - -
Trre13g04977 1018 SUPERFAMILY Zn-finger domain of Sec23/24 341 422 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Trre13g04977 1018 Gene3D von Willebrand factor, type A domain 425 662 IPR036465 -
Trre13g04977 1018 Gene3D - 296 748 - -
Trre13g04977 1018 SUPERFAMILY Helical domain of Sec23/24 760 867 IPR036175 GO:0006886|GO:0006888|GO:0030127
Trre13g04977 1018 SUPERFAMILY beta-sandwich domain of Sec23/24 187 758 - -
Trre13g04977 1018 PANTHER SEC24-RELATED PROTEIN 97 1015 - -
Trre13g04977 1018 Pfam Sec23/Sec24 beta-sandwich domain 665 749 IPR012990 -
Trre13g04977 1018 Pfam Sec23/Sec24 zinc finger 349 386 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Trre13g04977 1018 MobiDBLite consensus disorder prediction 112 126 - -
Trre13g04977 1018 MobiDBLite consensus disorder prediction 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04977 Trre-Chr13 55910187 55917495 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04977 K14007 - gmx:100791083 1659.04