Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04920 ATGCTGAGATTAAAAGCGTTTCGTCCTTCCACTGATAAAGTCGTTAAGATCCAATTGCATCCAACGCATCCATGGATGGTTACTGCCGATGATTCAGATCGAGTTTCTGTTTGGAATTGGGAACATCGTCAGGTGATATATGAGTTGAAAGCTGGTGGAGTCGATGAACGACGTTTAGTAGGTGCAAAATTGGAGAAGCTAGCTGAGGGAGAAACAGAGTCTAGAGGAAAACCGACAGAAGCCATTCGTGGAGGAAGTGTTAAGCAGGTGAATTTTTATGATGATGATGTACGCTTTTGGCAAAATTGGCATAATCGCTCTGCAGCGGCAGAGGCTCCAACAGCTGTCCATACTTCAGCTTTTAGTTTTCCCGCCCCATCAACAAAAGGAAGGCATTTTCTTGTCATATGTTGTTTAAACAAAGCTATATTTTTGGACTTGGTGACGATGCGAGGCCGTGATGTACCAAAGCAAGAGCTCGATAACAAGTCCCTACACTGCATGGAGTTCCTTTATAGATCTGGTGTTGGTGACGGTCCTCTCGTGGCTTTTGGTGCATCCGATGGAGTCATTAGAGTTCTCTCAATGATTACATGGAAGCTTGCGAGAAGATACACTGGAGGTCATAAAGGAACAATCTCTTGCTTGAGGTCCTTCATGGCAGCTTCAGGCGAGGCTCTTCTGGTTTCGGGTGCTAGTGATGGATTGCTCATAATTTGGAGTGCTGATCATGGACAAGATTCACGTGAACTTGTACCCAAGCTGAGTTTAAAAGCACATGATGGTGGGGTTGTGGCAGTTGAGCTGTCTAGAGTGATGGGTGGAACTCCTCAACTAATTACAATTGGTGCAGATAAGACATTAGCTATATGGGACACGGTCTCCTTTAAGGAGCTGCGGCGTATAAAACCAGTTCCAAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACCTGTGTCAAAGATTCTCACATATGGGCAATCGAACATCCCACATATTCCGCTCTCACTAGGCCATTGTGCGAATTGACAACAGTTATTCCTCCACACGCTCTTGCTCCTAATAAGAAACTGAGGGTGTATTGTATGGTTGCACATACTTTGCAGCCACATCTTGTTGCTATTGGAACCAATATTGGTGTTGTTATCTGTGAGTTTGATGCTAGATCTCTTCCACCTGTTGCTCCCCTACCTACCCCATCAGATAGTAGAGAGCATTCTGCTGTGTTTGTAATTGAAAGGGAGCTAAAGCTATTAAATTTTCAATTAAACAACTCTGTAAATCCATCCCTTGGAAGCTCCTTGGCAGAAACAGGCAGAACTCAGGGAGATTCTTTTGAACCATTACCTGTCAAGCAGGGGAAGAAGCACATTAGTACACCTGTTCCTCATGATTCATACTCGGTTCTTTCTGTGAGCAGTTCAGGAAAGTATTTAGCAATTGTTTGGCCAGATATTCCTTATTTCTCTGTCTACAAGGTCAGCGATTGGTCAATTGTTGACTCTGGCAGTGCAAGGCTTCTCGCTTGGGATACTTGTCGTGACAGATTTGCTATACTGGAATCATCATTACCTCCTCGAATTCCTATAATTCCCAAAGGTAGTTCATCAAAAAGAGCAAAAGAAGCTGCTGCAGCACAAGCAGCAGCAGCAGCAGCTGCTGCTGGTTCCGCAGCTTCTGTTCAAGTCCGAATCTTGTTAGATGACGGAACATCAAATATACTAATGAGGTCTGTTGGTGCACGCAGTGAACCAGTCATTGGTTTGCATGGAGGGGCACTGCTTGGTGTTGCCTATCGAACATCTAGGAGAATCAGTCCTATTGCTGCTACAGCTATTTCGACAATCCAGTCTATGCCATTATCCGGTTATGGAAGCAGCGGTCTTTCTTCTTTTACCACTTATGATGATGGATTTTCTTCACATAGATCTCCAGCTGAGGCGGCACCTCAAAACTTCCAGTTATACAGTTGGGAGACATTTCAACCTGTGGGTGCTCTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCATCGAGTATTGTGCATTTGCATACCAACAATACATAGTCATATCTTCTTTGCGCCCACAGTATAGATACTTGGGAGATGTTTCAATTCCATATGCTACTAGTGCTGTTTGGCACCGGAGGCAACTGTTTGTGGCAACACCAACTACTATAGAAGTTGTTTTTGTGGACGCTGGGGTTACACAAATTGACATTGAAACAAAAAAAATGAAAGAAGAGCAGAAATTGAGAGAAGCACAGTCAAGAGCAGTAGCAGAGCATGGAGAGTTAGCACTAATTACAGTTGAAGGCCCCCAATCTACTACAGAAGAAAGAATATCATTGAGACCACCAATGCTGCAGGTGGTTCGATTAGCTTCATTTCAGCATGCTCCTTCGGTGCCACCATTTCTATCGTTACCAAAACAATCTAGAGTTGATGGTGATGAAGCAGATGAGAGAAGGGCAAGTGAAGTAGCAGTGGGTGGAGGGGGTGTGTCTGTGGCAGTTACTCGTTTTCCGACAGAGCAGAAACGTCCAGTTGGGCCTCTTGTTGTGGTGGGTGTCAAGGATGGAGTTCTGTGGCTAATTGACAGGTACATGCGAGCTCACGCCTTATCCTTGAGTCATCCTGGTATTCGTTGCCGATGTCTTGCTGCTTATGGGGATGCTGTTAGTGCAGTAAAATGGGCAAGTAGGCTTGGAAGAGAACATCATGATGATTTAGCACAATTTATGCTAGGAATGGGCTATGCTACTGAAGCACTTCATTTGCCTGGAATATCAAAGAGGTTGGAGTTTGATTTGGCAATGAAGAGCAATGATTTGAAGAGAGCTCTTCATTGTCTTCTTACCATGAGTAACAGCCGGAATATTGGGCATGATGGTACTGGGCTTGGTTTGAATGACATTCTTAATTTAACAGATAAAAAACAAGACGTAGTTGAAGGTGTTCAGGGCATAGTGAAATTCGCAAAAGAGTTCTTGGATCTTATTGACGCTGCAGATGCTACAGCACAGGGTGAAATTGCCCGTGAAGCTCTGAAGCGATTAGCCGCAGCTGGATCAGTGAAAGGTGCATTACAAGGACATGAGTTGAGGGGATTAGCATTGCGCCTTGCAAATCATGGAGAGTTGACTCGGCTAAGTGGTCTAATAAACAACCTAATTACGCTTGGCTTGGGACGGGAAGCCGCATTTTCTGCTGCTGTTTTGGGCGACAATGCTCTAATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAAGCTGTGCTTCATGCTCATGCACATGGACGTCCAACTCTGAAGAATTTGGTTCAGACCTGGAACCAAGTGCTACAGAGAGAGGTTGAGCCTACTCCATCACAAAAGACAGATGCTACAGCTGCATTTCTAGCTTCTCTCGAGGAGCCAAAGCTTACGAGTTTGGCAGAAGCGGGGAAGAAACCACCAATTGAAATCCTACCTCCGGGAATGATGTCGCTTAATGCCCCTATCTCGATTCAGAAAAAACCAGCTTCTGCTGCCCAGAATTCCCAACCACAACCGGGCAAGCCATTGGCACTGGAAGCGGGCAGGCCATTGGCACTGGAAGCACCTCCTACAGCCGCAGCAGCGCCAGACAGTTCTACACAGCAGCCCGAATCTACACCTGCATCTGCACCTGCGCCAGTTAGTGATCCACCTCAATCCGATGCCACGCCAACTCCTGAGGCCGCTCCACCTGAATCAAATTCGGGAGAAACTCCTGTAGATAATGGAGCTCCTACCCCAGCCTCAGTGAGTGATGAAAATACAAATGTTAATGGGGAAACTGTCCAGGAAGAGCCTAAAAGTGATCCAGCACCTCCGGAGGCCCCGTCACCGGTAGCAGAAGTTTCAGAGACTAATACTCCAAATCCAACAACAGTACCTGCAAGTGGTGACCCTTTCATATGA 3984 0.4586 MLRLKAFRPSTDKVVKIQLHPTHPWMVTADDSDRVSVWNWEHRQVIYELKAGGVDERRLVGAKLEKLAEGETESRGKPTEAIRGGSVKQVNFYDDDVRFWQNWHNRSAAAEAPTAVHTSAFSFPAPSTKGRHFLVICCLNKAIFLDLVTMRGRDVPKQELDNKSLHCMEFLYRSGVGDGPLVAFGASDGVIRVLSMITWKLARRYTGGHKGTISCLRSFMAASGEALLVSGASDGLLIIWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGTPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELTTVIPPHALAPNKKLRVYCMVAHTLQPHLVAIGTNIGVVICEFDARSLPPVAPLPTPSDSREHSAVFVIERELKLLNFQLNNSVNPSLGSSLAETGRTQGDSFEPLPVKQGKKHISTPVPHDSYSVLSVSSSGKYLAIVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESSLPPRIPIIPKGSSSKRAKEAAAAQAAAAAAAAGSAASVQVRILLDDGTSNILMRSVGARSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLSGYGSSGLSSFTTYDDGFSSHRSPAEAAPQNFQLYSWETFQPVGALLPQPEWTAWDQTIEYCAFAYQQYIVISSLRPQYRYLGDVSIPYATSAVWHRRQLFVATPTTIEVVFVDAGVTQIDIETKKMKEEQKLREAQSRAVAEHGELALITVEGPQSTTEERISLRPPMLQVVRLASFQHAPSVPPFLSLPKQSRVDGDEADERRASEVAVGGGGVSVAVTRFPTEQKRPVGPLVVVGVKDGVLWLIDRYMRAHALSLSHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMKSNDLKRALHCLLTMSNSRNIGHDGTGLGLNDILNLTDKKQDVVEGVQGIVKFAKEFLDLIDAADATAQGEIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLINNLITLGLGREAAFSAAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNLVQTWNQVLQREVEPTPSQKTDATAAFLASLEEPKLTSLAEAGKKPPIEILPPGMMSLNAPISIQKKPASAAQNSQPQPGKPLALEAGRPLALEAPPTAAAAPDSSTQQPESTPASAPAPVSDPPQSDATPTPEAAPPESNSGETPVDNGAPTPASVSDENTNVNGETVQEEPKSDPAPPEAPSPVAEVSETNTPNPTTVPASGDPFI 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04920 1327 Gene3D - 897 1145 - -
Trre13g04920 1327 PANTHER TSET COMPLEX MEMBER TSTF 1 1251 - -
Trre13g04920 1327 SMART WD40_4 250 292 IPR001680 GO:0005515
Trre13g04920 1327 SMART WD40_4 1 39 IPR001680 GO:0005515
Trre13g04920 1327 SMART WD40_4 198 241 IPR001680 GO:0005515
Trre13g04920 1327 Gene3D - 3 352 IPR015943 GO:0005515
Trre13g04920 1327 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 301 IPR001680 GO:0005515
Trre13g04920 1327 MobiDBLite consensus disorder prediction 1184 1203 - -
Trre13g04920 1327 MobiDBLite consensus disorder prediction 1215 1327 - -
Trre13g04920 1327 MobiDBLite consensus disorder prediction 1306 1320 - -
Trre13g04920 1327 MobiDBLite consensus disorder prediction 1220 1235 - -
Trre13g04920 1327 MobiDBLite consensus disorder prediction 1236 1251 - -
Trre13g04920 1327 SUPERFAMILY WD40 repeat-like 7 509 IPR036322 GO:0005515
Trre13g04920 1327 MobiDBLite consensus disorder prediction 442 469 - -
Trre13g04920 1327 MobiDBLite consensus disorder prediction 1252 1289 - -
Trre13g04920 1327 MobiDBLite consensus disorder prediction 1184 1199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04920 Trre-Chr13 55486156 55498984 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04920 - - gmx:100777567 2236.84