Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04915 ATGAAGGAACCAGAAGAAGTTATGAGAATGCGAGGAGGTTCTGTACTTGGAAAGAAAACTATTCTGAAGAGTGACCATTTTCCTGGTTGTCAGAATAAGCGATTATCTCCTCAGATCGAAGGTGCTCCTAATTATCGTCAAGCTGAGTCTTTGCATGTTCATGGTGTTGCAATCCCAACCGTTGATGGAATCAGAAATGTTCTTAATCACATTGGTGCTCGCTTACCACGGAACAAGAGACAACAAGTTCTTTGGATTAGTCTCCGTGAAGAACCGCTTGTGTACATTAATGGCCGCCCATTTGTTTTACGCGATGTGGAGAGACCGTTCTCCAACCTTGAGTATACGGGAATTAATAGGGAACGGGTTGAACAAATGGAAGCTCGTTTGAAAGAAGACATCCTGTTGGAAGCTGAAAGATATGGAAATAAGATCCTTGTGACGGATGAACTGCCCGATGGTCAGATGGTGGACCAATGGGAACCGGTGTCGTGTGATTCTATAAAGACACCATTAGAGGTGTATGAGGAATTGCAAGTGGAGGGATACCTTGTTGATTATGAACGTGTTCCTATAACTGATGAAAAAGCACCTAAGGAACTGGATTTTGATATTTTGGTACATAAAATTTCTCAAGCTGATGTAAGTACAGAGATAATTTTTAATTGCCAAATGGGGCGTGGACGAACGACAACTGGAATGGTCATTGCAACTTTGGTCTACCTCAATCGAATTGGGGCCTCTGGGATTCCAAGAAGCAATTCCATGGGTAGAATTTTTCAATCCATGACCAATGTTGCTGACCATTTGCCTAACTCAGAGGAGGCAATTCGCAGGGGAGAATATGCAGTCATAAGAAGCTTGGTTCGGGTGTTAGAGGGCGGTGTTGATGGGAAGCGACAAGTGGACAAAGTCATTGACAAATGTGCTTCAATGCAGAATCTGCGTGAAGCAATTGGCGCCTATCGCAATAGCATTCTGCGACAGCCAGATGAGATGAAAAGGGAGGCATCACTTTCCTTTTTTGTAGAGTACTTGGAGAGATACTACTTTTTAATATGTTTTGCTGTGTACCTTCATTCAGAAAGAGATATGCTCCATTCTAGTACTGCTGATCACAGTAGTTTTTCTGACTGGATGAGAGCAAGGCCTGAACTCTACAGCATTATTCGCAGGTTACTCAGGAGAGATCCAATGGGTGCACTTGGATATTCAAGTTTGAAACCATCTTTAAAGACGATAGCTGAATCAACTGATGGCCGGCCATCTGAGATGGGTAATGTTGCTGCCTTGAGAAAAGGCGAGGTTCTTGGTAGTCAAACTGTTCTAAAAAGTGATCACTGCCCTGGATGCCAAAATCCGAGTTTGCCAGATAGAGTGGACGGTGCTCCTAATTTTCGAAAAGTTCCTGGATTTCCAGTTTTTGGTGTTGCAAATCCAACCATTGATGGTATCCGGTCTGTCATTCATAGGATTGGCAGTACTAATGGTGGACGCCCAATACTTTGGCATAATATGAGAGAAGAGCCTGTTATTTACATCAATGGGAAGCCATTTGTTCTTCGTGAAGTTGAAAGACCATACAAAAACATGTTGGAGTACACGGGTATTGACCGTGAAAGAGTGGAGAAAATGGAAGCTCGGTTAAAAGAAGACATTTTAAGGGAAGCTAAACAATATAGCAGTGCCATAATGGTTATTCATGAAACAGATGATGGACATATATTTGATGCTTGGGAGCATGTTACCTCTGATGTGGTTCAAACCCCACTTGAAGTTTTCAGAGGCCTGGAAGCTGATGGGTTTCCCATTAAGTATGCACGTGTACCCATCACGGATGGAAAAGCTCCTAAACGTTCTGACTTCGATACTTTGGCAATTAATATTGCTTCTGCTCCAAAGGACACTGCTTTTGTTTTCAATTGTCAGATGGGTAGGGGCAGGACTACTACCGGTACGGTCATAGCCTGCCTTGTGAAACTTCGTATTGATTTTGGTAGGCCCATTAAAATATTGAATGATGATATGACTCAAGAAGAATCAAATGGCGGTTCTTCAAGTGGAGATGAAGCTTTGGGCTGTGTCACTGCATTGACCTCAAATACTTCACAAACGAAGATAGATGAGAAACAAAACCGAGTTTTTGGTATAAATGACATTCTCTTGTTATGGAAGATAACCACCTTATTTGATAATGGTGTTGAATGCCGAGAGGCATTAGATGCTGTTATTGATAGATGTTCTGCACTTCAGAACATTCGTCAAGCTGTCCTGCAATATAGAAAAGTATTCAATCAACAGCATGTTGAGCCTAGGGTAAGGAGAGTGGCTTTAAATCGTAGTGCTGAGTACTTGGAGCGGTACTTCCGTCTAATTGCCTTTGCAGCATATCTTGGAAGTGAAGCATTCGATGGGTTTTGTGGGCAAGGAGAATCCAGAATGACATTTAAGGTTTGGTTGCATCAGAGGCCAGAAGTACAGGCTATGAAATGGAGCATCAGATTAAGACCAGGGAGATTTTTCACTATTCCTGAGGAATTGAGAGAATCACAAGAGTCTCAGCATGGAGATGCAGTGATGGAGGCTACTGTCAAGGCCAGAAATGGTTCTGTTTTGGGGAAGGGCTCCATACTTAAAATGTATTTCTTTCCTGGACAGAGAACTTCCAATAATATACAAATACATGGTGCACCTCATGTTTACAAGGTTGATGAATACCATGTATGTTGCATGGCAACTCCAACCATTTCTGGGGCCAAGGAGATGCTAAACTATTTGGATGCTAAGTCTAAACCTGGGTTCACTGCTCGAAAAGTTATATTGACCGATGTAAGAGAAGAAGCGGTTGTTTATATCAATTGTGTTCCCTTTGTCCTTAGGGAGTTAAACAAACCTGTTGATACACTCAAACACGTTGGAATCACCGGTCCTGTGGTTGAACACATGGAGGCACGGCTGAAAGAAGACATACTGGCTGAGATTAGACAGTCTGGTGGGAGAATGCTACTACACCGTGAAGAATATGACCCCTCCACAAATCAGTCTGCTGTGGTTGGATACTGGGAAAACATTCTGTCAGATGATGTGAAGACACCAGCAGAAGTTTATTCTCTTCTAAAAGATGATGGATATGATATTGTCTATCGGAGGATACCCTTAACAAGAGAGAGAGATGCCTTGGCCTCCGATGTCGATGCAATACAGTACTGTCAAGATGACTCTGCAGGGAGTTACCTCTTTGTATCGCACACAGGATTTGGTGGTGTCGCATATGCAATGGCCATTATCTGTATTAGACTTGGTGCAAAGGCAAACTTTGCATCCAAAGTCCTGCAACCATCATTTGGTCCTGATTCATATGCTGTGATCGATGAGAATTTGCTTTCTCGAGTTTCTAATGAAACAGCGTTCAGGATGGGCGATTATCGTGACATTTTGAACCTTACAAGAGTCCTCGTACATGGTCCCCAAAGCAAAGCAGATGTTGACATTGTCATTGAAAGATGTGCAGGCGCAGGGCATATACGAGATGATATTCTTTATTACAATAGAGAATTTGAGAAGTTCACTGATGATGATGACGAGGAGCGTGCATATCTTATGGACATGGGTATCAAGGCTTTGAGACGATACTTTTTCCTTATCACATTCAGATCGTATCTCTATTGCACCTCTCCCGACGATACAGAATTTGCTGCATGGATGGATGCAAGACCGGAGCTTGGTCATCTTTGTAGCAATCTAAGAATAGATAAATAG 3759 0.4248 MKEPEEVMRMRGGSVLGKKTILKSDHFPGCQNKRLSPQIEGAPNYRQAESLHVHGVAIPTVDGIRNVLNHIGARLPRNKRQQVLWISLREEPLVYINGRPFVLRDVERPFSNLEYTGINRERVEQMEARLKEDILLEAERYGNKILVTDELPDGQMVDQWEPVSCDSIKTPLEVYEELQVEGYLVDYERVPITDEKAPKELDFDILVHKISQADVSTEIIFNCQMGRGRTTTGMVIATLVYLNRIGASGIPRSNSMGRIFQSMTNVADHLPNSEEAIRRGEYAVIRSLVRVLEGGVDGKRQVDKVIDKCASMQNLREAIGAYRNSILRQPDEMKREASLSFFVEYLERYYFLICFAVYLHSERDMLHSSTADHSSFSDWMRARPELYSIIRRLLRRDPMGALGYSSLKPSLKTIAESTDGRPSEMGNVAALRKGEVLGSQTVLKSDHCPGCQNPSLPDRVDGAPNFRKVPGFPVFGVANPTIDGIRSVIHRIGSTNGGRPILWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVEKMEARLKEDILREAKQYSSAIMVIHETDDGHIFDAWEHVTSDVVQTPLEVFRGLEADGFPIKYARVPITDGKAPKRSDFDTLAINIASAPKDTAFVFNCQMGRGRTTTGTVIACLVKLRIDFGRPIKILNDDMTQEESNGGSSSGDEALGCVTALTSNTSQTKIDEKQNRVFGINDILLLWKITTLFDNGVECREALDAVIDRCSALQNIRQAVLQYRKVFNQQHVEPRVRRVALNRSAEYLERYFRLIAFAAYLGSEAFDGFCGQGESRMTFKVWLHQRPEVQAMKWSIRLRPGRFFTIPEELRESQESQHGDAVMEATVKARNGSVLGKGSILKMYFFPGQRTSNNIQIHGAPHVYKVDEYHVCCMATPTISGAKEMLNYLDAKSKPGFTARKVILTDVREEAVVYINCVPFVLRELNKPVDTLKHVGITGPVVEHMEARLKEDILAEIRQSGGRMLLHREEYDPSTNQSAVVGYWENILSDDVKTPAEVYSLLKDDGYDIVYRRIPLTRERDALASDVDAIQYCQDDSAGSYLFVSHTGFGGVAYAMAIICIRLGAKANFASKVLQPSFGPDSYAVIDENLLSRVSNETAFRMGDYRDILNLTRVLVHGPQSKADVDIVIERCAGAGHIRDDILYYNREFEKFTDDDDEERAYLMDMGIKALRRYFFLITFRSYLYCTSPDDTEFAAWMDARPELGHLCSNLRIDK 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04915 1252 CDD PTP_paladin 11 309 - -
Trre13g04915 1252 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 6 245 IPR029021 -
Trre13g04915 1252 Gene3D Protein tyrosine phosphatase superfamily 20 287 IPR029021 -
Trre13g04915 1252 Gene3D Protein tyrosine phosphatase superfamily 879 1112 IPR029021 -
Trre13g04915 1252 Gene3D Protein tyrosine phosphatase superfamily 444 684 IPR029021 -
Trre13g04915 1252 FunFam Paladin isoform B 879 1134 - -
Trre13g04915 1252 CDD PTP_paladin 432 747 - -
Trre13g04915 1252 SMART PTPlike_phytase_2 504 660 - -
Trre13g04915 1252 SMART PTPlike_phytase_2 86 241 - -
Trre13g04915 1252 SMART PTPlike_phytase_2 942 1100 - -
Trre13g04915 1252 FunFam Paladin isoform A 442 676 - -
Trre13g04915 1252 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 431 662 IPR029021 -
Trre13g04915 1252 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 861 1098 IPR029021 -
Trre13g04915 1252 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 428 1170 - -
Trre13g04915 1252 FunFam Paladin isoform A 21 265 - -
Trre13g04915 1252 Pfam Inositol hexakisphosphate 943 1098 - -
Trre13g04915 1252 Pfam Inositol hexakisphosphate 86 240 - -
Trre13g04915 1252 Pfam Inositol hexakisphosphate 504 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04915 Trre-Chr13 55441204 55451660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04915 - - gmx:100788460 2226.82