Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04914 ATGACGGCGAATGAGTTACATGGAATTCCCAAGTTATTAAGTTCAAAGAAGTCATCCTTCGACCGTGACAGGTTTCTGCCTTCGAATGCAGCATCTAATTTTCCCTATGGAAAATTCTCAAGTGTTATTCAGAGAAACAAAACTAAAAGATTTTTGGTTACTTCTACTCTAGCTGATGTTGCAAATGATTTTATGGCCTTACAATCGCCAATTTTTGCTGGACAAGAAGTCAATCCAAAGACCGTTGCATCGATCATTTTAGGTGGTGGAGCTGGAACTCGTTTATTCCCCCTTACTCAGAATAGGGCTAAACCGGCTGTGCCATTCGGAGGATGTTATAGGCTGGTGGACATACCAATGAGTAATTGTATTAATAGTGGAATTAATAAAATTTACGTCCTTACACAATTCAATTCTCAGTCCCTCAACCGCCATATTGCTCGAACGTATAATTTGGGAGGTGGCGTTAACTGTGGTGGTAGTTTTATTGAGGTATTGGCAGCAACTCAAACACTCGGCGAATCAGGAAATAAGTGGTTTCAGGGCACTGCCGATGCTGTAAGACAATTCCTTTGGTTGTTTGAGGATGCTGATCATAAAAACATAGAGAACATTCTGATATTGTGTGGCGATCAGCTCTATCGAATGGATTACATGGAACTTTTGCAGAAACACATTAATTCATGTGCCGATATATCTGTATCGTGTCTACCAGTAGATGGCAGTCGCGCCTCTGATTTTGGATTAGTGAAGGTTGATGAAAGAGGACGGATACGCCAGTTCATGGAAAAACCAAAGGGAGATTTATTAAGATCTATGCATGTAGATACGAGTATTTTTGGATTATCAGCTCATGAAGCAAGGAAATTTCCATATATTGCATCAATGGGTATATATGTGTTTAAATTAGAAGTTCTACGCAAACTTCTCTGGAGCTGTTATCCTAATGCAAATGATTTTGGATCCGAGGTCATTCCAATGGCTGCAAAAGATTTTAAAGTTCAGGCATGTCTTTTCAGTGGTTATTGGGAAGATATTGGAACTATAAAATCTTTCTTTGATGCAAACTTGGCTCTTATGGACAAGCCGCCAAAGTTTCAGTTATATGATCAGTCAAAGCCGATTTTTACATGTCCTCGGTTCCTACCCCCAACTAAAATGGAGAAGTGCCAGGTGATTAATTCTTTGATTTCAGATGGTTGCTTTTTAAGAGAGTGCATGGTTGAAAAATCCATCGTAGGAATTCGCTCGAGACTTGACTCTGGAGTGCAGCTAAAGGATACCTTGATGATGGGCGCTGACTATTACCAAACAGAGGCTGAGATTGCGTCTCTTTTAGCAGCGAGAGACGTTCCTATAGGCATAGGCAAGAATACAAAAATTATGAATTGTATAATTGACAAAAACGCAAGAATCGGAAACAATGTAATAATTGCAAACAAAGAAAATGTGCAGGAGGCTGACAGACCATCTGAGGGGTTTTATATTCGATCAGGGATCACGGTAGTGTTAAAAAACTCGGTAATAAACAATGGCACAATCATTTAA 1548 0.3953 MTANELHGIPKLLSSKKSSFDRDRFLPSNAASNFPYGKFSSVIQRNKTKRFLVTSTLADVANDFMALQSPIFAGQEVNPKTVASIILGGGAGTRLFPLTQNRAKPAVPFGGCYRLVDIPMSNCINSGINKIYVLTQFNSQSLNRHIARTYNLGGGVNCGGSFIEVLAATQTLGESGNKWFQGTADAVRQFLWLFEDADHKNIENILILCGDQLYRMDYMELLQKHINSCADISVSCLPVDGSRASDFGLVKVDERGRIRQFMEKPKGDLLRSMHVDTSIFGLSAHEARKFPYIASMGIYVFKLEVLRKLLWSCYPNANDFGSEVIPMAAKDFKVQACLFSGYWEDIGTIKSFFDANLALMDKPPKFQLYDQSKPIFTCPRFLPPTKMEKCQVINSLISDGCFLRECMVEKSIVGIRSRLDSGVQLKDTLMMGADYYQTEAEIASLLAARDVPIGIGKNTKIMNCIIDKNARIGNNVIIANKENVQEADRPSEGFYIRSGITVVLKNSVINNGTII 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04914 515 CDD ADP_Glucose_PP 85 346 - -
Trre13g04914 515 NCBIfam glucose-1-phosphate adenylyltransferase 83 479 IPR011831 GO:0005978|GO:0008878
Trre13g04914 515 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 71 380 IPR029044 -
Trre13g04914 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 294 304 IPR005836 GO:0005978|GO:0008878
Trre13g04914 515 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 57 515 IPR011831 GO:0005978|GO:0008878
Trre13g04914 515 Gene3D Hexapeptide repeat proteins 381 515 - -
Trre13g04914 515 Pfam Nucleotidyl transferase 84 360 IPR005835 GO:0009058
Trre13g04914 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 179 187 IPR005836 GO:0005978|GO:0008878
Trre13g04914 515 FunFam Glucose-1-phosphate adenylyltransferase 381 515 - -
Trre13g04914 515 SUPERFAMILY Nucleotide-diphospho-sugar transferases 81 476 IPR029044 -
Trre13g04914 515 SUPERFAMILY Trimeric LpxA-like enzymes 379 515 IPR011004 -
Trre13g04914 515 CDD LbH_G1P_AT_C 383 509 - -
Trre13g04914 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 88 107 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04914 Trre-Chr13 55434647 55438383 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04914 K00975 - gmx:100786313 896.73