Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04898 ATGTCATTTTCCTTTATCTCCCAATTATTCTTTTGTTTTACTATTTTTATCTACTCTACATCTTTAGGAGTTGAATCATGGGGCACCCCTAGTATACCAATCTCATCTCTAATCACTAAAAGCCTTTATGACTCAATTTTTCTACACAAAGATGACACTGCATGTCCTGCAAAAAACTTTTATCCTTACCAATCCTTCATTCAAGCTTCCAAATATTTTCCTCAATTTGGTACAACAGGTTGTTTGACCACAAGAAAACGTGAGATAGCTGCTTTTCTTGCTCAAATTTCACATGAAACAACTGGAGGTTGGGACACTGCACCTGATGGACCATTTGCTTGGGGATTATGCTTCAAAGAAGAAATTAGTCCTCAGAGTAATTACTGTGATTCTACTAACAAAGATTGGCCTTGTTTTGAAGACAAAAGTTACAAAGGAAGAGGTCCCATTCAACTTTCTTGGAATTACAACTATGGACCAGCAGGGAAGGCCTTAGGATTTGATGGGCTTAAGAATCCAGAAATAGTATCAAACAATTCAGTGATTGCTTTCAAAACTGCTCTATGGTTTTGGATGACAGAGAGAAAACCAATACCTTCTTGTCACAATGTTATGGTTGGAAAATATGTGGCAACAAAAGATGACATAGCTGCTAATCGAACTGCTGGTTTTGGCTTAGTAACAAACATAGTCAATGGTGGATTGGAATGTGGAATTCCAAATGATGAAAGAGTTAATGATCGTATTGGATTTTTTAAAAGATATACCAAGTTGTTCAATGTGGATACTGGACCTAATTTGGATTGTGCATATCAAAAATCCTTATAA 828 0.3611 MSFSFISQLFFCFTIFIYSTSLGVESWGTPSIPISSLITKSLYDSIFLHKDDTACPAKNFYPYQSFIQASKYFPQFGTTGCLTTRKREIAAFLAQISHETTGGWDTAPDGPFAWGLCFKEEISPQSNYCDSTNKDWPCFEDKSYKGRGPIQLSWNYNYGPAGKALGFDGLKNPEIVSNNSVIAFKTALWFWMTERKPIPSCHNVMVGKYVATKDDIAANRTAGFGLVTNIVNGGLECGIPNDERVNDRIGFFKRYTKLFNVDTGPNLDCAYQKSL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04898 275 FunFam Endochitinase (Chitinase) 120 178 - -
Trre13g04898 275 CDD chitinase_GH19 38 269 - -
Trre13g04898 275 Gene3D - 41 274 - -
Trre13g04898 275 Pfam Chitinase class I 37 269 IPR000726 GO:0004568|GO:0006032|GO:0016998
Trre13g04898 275 Gene3D Endochitinase, domain 2 120 178 - -
Trre13g04898 275 ProSitePatterns Chitinases family 19 signature 2. 182 192 IPR000726 GO:0004568|GO:0006032|GO:0016998
Trre13g04898 275 PIRSF Endochitinase 7 275 IPR016283 GO:0004568|GO:0005975
Trre13g04898 275 SUPERFAMILY Lysozyme-like 34 274 IPR023346 -
Trre13g04898 275 PANTHER CHITINASE-RELATED 28 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04898 Trre-Chr13 55349945 55351342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04898 33 273 Glycoside Hydrolase AT4G01700 73.444 3.22e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04898 - - gmx:100784196 486.878