Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04894 ATGGCGGGGACTGAAGCCACAAAACAACAATCCGGCGGCGGTGCCAAACAACCTAAACAACCTAAACCACAAAAACAACAACAATCTGGTGCTGGTGCTGGTGGTGGGAAGAAGAAAGAAGTGAAGAAAGAAACTGGATTAGGTCTAACCAATAAGAAGGCTGACAACTTCGGCGAGTGGTACTCTGAGGTTGTTGTTAATGGTGAAATGATAGAGTATTATGACATTTCTGGTTGCTATATTCTTAGACCTTGGTCAATGGCGATTTGGGAGAATATGCAAGCGTTTTTTGATCCAGAAATTAAGAAGATGAAGATCAAGAACTGCTACTTCCCTGTTTTTGTTTCTTCTACTGTTCTGGAAAAGGAGAAGGACCATATTGAGGGTTTTGCTCCAGAGGTGGCTTGGGTCACAAGATCTGGAAAATCGGAGCTAGAAATTCCTATTGCCATTCGTCCAACCAGTGAAACAGTTATGTACCCCTACTACTCCAAGTGGATTAGGGGACACAGAGACTTGCCACTAAAACTTAATCAGTGGTGCAACGTAGTAAGATGGGAGTTCAGCAATCCGACACCATTCATCAGGAGTCGCGAGTTTCTTTGGCAAGAAGGACACACTGCTTTTGCTACTAAGGAGGAAGCAGATACAGAGGTTCTTGAGATTTTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCGGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCTAATACTGGTCGTGGCATTCAAGGTGCAACTTCTCATTGTTTGGGACAAAATTTTGCGAAGATGTTTGACATTAACTATGAAAATGAGAAGGGAGAGAGAGCGATGGTCTGGCAGAACTCATGGGCCTACAGTACCCGAACCATTGGGGTGATGGTGATGGTTCATGGTGATGATAAGGGATTGGTGCTACCTCCTAAAGTAGCATCAGTTCAAGTTATTGTGATTCCTGTGCCTTACAAAGACGCCGATACTCAAGGAATCTTGGATGCCTGTTCTGCAACTGTGACTGCGTTGGTGGAAGCAGGAATACGCGCTGAGTCAGATTCTAGAGATAACTATTCTCCTGGATGGAAGTATTCTCAGTGGGAAATGAAAGGTGTTCCTCTAAGGATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGGTTCGCGCTGTTCGTCGTGACAGTGGAGCAAAAATAGACATTGCTAATGCTAATTTGGTTGAGGAAATAAAGAAGTTGCTCGATAATATTCAACAGAATCTGTTTGATGTTGCAAAGCAAAAACGAGATGAGTGTATTCAGGTCATACATACATGGGATGAGTTTATAGAAGCTTTAAATCAAAAAAAGATGATATTAGCTCCTTGGGCTGATGAGAAGGAGGTTGAAGAAGATGTCAAAGCAAGGACAAAGGGTGAGACTGGAGCAGCAAAGACACTCTGCAGTCCCTTTGATCAGCCAGAACTCCCCGAAGGTACCACATGCTTTGCGTCCGGCAAGCCTGCAAAGAAGTGGTCATACTGGGGCAGAAGTTACTAG 1593 0.4344 MAGTEATKQQSGGGAKQPKQPKPQKQQQSGAGAGGGKKKEVKKETGLGLTNKKADNFGEWYSEVVVNGEMIEYYDISGCYILRPWSMAIWENMQAFFDPEIKKMKIKNCYFPVFVSSTVLEKEKDHIEGFAPEVAWVTRSGKSELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFDINYENEKGERAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGILDACSATVTALVEAGIRAESDSRDNYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRAVRRDSGAKIDIANANLVEEIKKLLDNIQQNLFDVAKQKRDECIQVIHTWDEFIEALNQKKMILAPWADEKEVEEDVKARTKGETGAAKTLCSPFDQPELPEGTTCFASGKPAKKWSYWGRSY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04894 530 CDD ProRS_anticodon_zinc 323 530 - -
Trre13g04894 530 Pfam Anticodon binding domain 334 430 IPR004154 -
Trre13g04894 530 SMART ProRS_C_1_2 457 530 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 Pfam Prolyl-tRNA synthetase, C-terminal 457 530 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 Gene3D - 328 448 IPR036621 -
Trre13g04894 530 FunFam Bifunctional glutamate/proline--tRNA ligase 49 327 - -
Trre13g04894 530 SUPERFAMILY Class II aaRS and biotin synthetases 55 321 IPR045864 -
Trre13g04894 530 MobiDBLite consensus disorder prediction 1 44 - -
Trre13g04894 530 PANTHER PROLYL-TRNA SYNTHETASE 12 530 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 Gene3D Bira Bifunctional Protein; Domain 2 50 327 IPR045864 -
Trre13g04894 530 PRINTS Prolyl-tRNA synthetase signature 189 200 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 PRINTS Prolyl-tRNA synthetase signature 149 160 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 PRINTS Prolyl-tRNA synthetase signature 108 126 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 PRINTS Prolyl-tRNA synthetase signature 179 187 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g04894 530 FunFam Proline--tRNA ligase, cytoplasmic 451 530 - -
Trre13g04894 530 CDD ProRS_core_arch_euk 56 317 IPR033721 -
Trre13g04894 530 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 149 315 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre13g04894 530 NCBIfam proline--tRNA ligase 51 530 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 Coils Coil 425 445 - -
Trre13g04894 530 Gene3D - 451 530 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 89 327 IPR006195 -
Trre13g04894 530 FunFam bifunctional glutamate/proline--tRNA ligase 328 448 - -
Trre13g04894 530 SUPERFAMILY Class II aaRS ABD-related 322 449 - -
Trre13g04894 530 Hamap Proline--tRNA ligase [proS]. 50 530 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Trre13g04894 530 SUPERFAMILY C-terminal domain of ProRS 453 530 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04894 Trre-Chr13 55327200 55331226 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04894 K01881 - gmx:100782067 948.732