Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04893 ATGGCTAATAACCCAACACAACCTAATGTTGGGTTTATCCCTTCAAACCCAGAAGAAGATAGACAAACTCCAATTCATCCTCCTCCCCCTCCTCCAACTTTTGCACCTAGATTTCCTCCACCAATTTTACATTTACAGAAAGATCAAGGTTCTGTTCATTCCAATGCTGTATCACCTGTAAATGGCAGTCCAGTTCCTCATATGAGCACCCCTCCTGGACCTCCTGTTTTTACATCACCTGTACGTCCGGCTGCTGTTCCTTTTCGAACATCACCCGCTTCGCCTCAGCCGCCTGCTCTTTCTACTGCATCTTCTTTGCCAACATCATCGTCCCCGCTTTACTCAAATGGATCGTTTGACTTGCAGTCACAAGTTTCTGGTGGCATAGAGGATCACATTCCACTTGGGGAGTCGTCTTCCTTTGTACTTTTTTCAGCTCATAAGGTATTGAAGCAGAAGAAACAAGCTAATGTGCCTAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGAGAGGTCTCAACAGGCCAGTGGCAGTGTGTTATTTGTCGGAAACTGAATGGAAGTGATGGTGAGTACATTGCACATAGCAAGGAAGATCTTCACAGATTTCCAGAATTATCTTCACCGATGGTTGACTTTGTTCAAACTGGGACCAAGAGACCTGGTTATGTTCCAGTTTCAGATTCCAGAATGTCTGCACCAGTAGTTCTTGTAATAGATGAAAGTTTAGATGAACCTCACTTACACCATCTTCAGAGCTCTTTGCATGCATTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTATACTGTATGGCCGTACTGTATCAGTGTATGACTTTTCAGAAGATTCAGTTGCATCTGCTGATGTGCTTCCCGGGGACAAGTCGCCAAGTCAAGATTCTTTGAAGGCTTTGATTTATGGTACCGGTATATATTTGTCACCAATGCATGCTTCACTGGCTGTAGCGCATTCCATATTTTCATCATTGAGGCCATATAAGTTGAACGTACCAGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTCGCTATAATTCAGGGCCCATCTGCCGATCTGTCCCGAGGGGTAGTCAAAAGATCAGGGGGTAATAGTAGAATTATTGTCTGTGCCGGTGGTCCAAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAACCACCCTAATTATCCATATATGGAAAAGACAGCATTAAAATGGATGGAGAATTTAGGTCGTGAGGCTCACCGACACAATATATTGGTTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAGCATCAGGTGGTGTTTTGGTTCTTCACGATGATTTTGGAGAAGCCTTCGGCGTTAATTTACAAAGGGCATCTGCCAGATCAGCAGGCTCCCATGGATTGTTAGAATTGCGGACATCAGATGATATTCTCATTACGCAAGTTGTGGGTCCGGGGGAAGAGTCGCACGTAGACACCCATGAAACATTTAAAAATGACACCGCTTTTTATATTCAAATGCTAAGTGTTGAAGAGACACAGAGCTTCTCTCTCTCCATGGAAACCAAAGGAGATATCAAAGGCGACTTTGTTTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTATCAGGCGGATGTGTCAAGGGTTATTACCGTTAGATTGCCAACAGTAGATAGTGTTTCGGGATATCTTGAGAGTGTTCAGGATGAAGTGGCTGCTGTCCTCATTGCAAAGAGAACTCTGTTACGAGCCAAAAACCATTCTGTTGCTGTTGATATGCGGGCAACAATAGATGAAAGAATCAAAGATATTGGTCTAAAATTTGGCTCTCAATTACCCAAATCAAAACTTCATTGCTTCCCAAAGGAGCTGTCTCTCTTACCGGAGCTCCTTTTCCATCTCAGGAGAGGCCCACTATTGGGATGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACCTGTTTCTAAATGCATCCTTTGATCTATCGCTTAGAATGGTGGCTCCACGTTGCCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCAGCTTATGATCTTGCTATGCAGTCTGATACTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGCTGGGTGCTGAACTTGTAGCTGATGAAGGAAAAAGTGCTGCTGCTTTGGCTGCATGCAGGACATTGGCTGAAGAATTGACCGAATTCCGTTTTCCAGCTCCTCGTATCCTAGCATTCAAGGAGGGTAGCTCGCAGGCTCGATATTTTGTGTCGCGTCTCATACCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCACGGTTCCCACAACTAAGAACATTAACATCAGAACAGAGAACAAAGCTAAAAAGCAATTTTGTTCACTTCGACGATCCAAGTTTCTGTGAATGGATGCGAAGTTTGAAGGTCGTACCACCGCAACCGAGCTGA 2505 0.4447 MANNPTQPNVGFIPSNPEEDRQTPIHPPPPPPTFAPRFPPPILHLQKDQGSVHSNAVSPVNGSPVPHMSTPPGPPVFTSPVRPAAVPFRTSPASPQPPALSTASSLPTSSSPLYSNGSFDLQSQVSGGIEDHIPLGESSSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGQWQCVICRKLNGSDGEYIAHSKEDLHRFPELSSPMVDFVQTGTKRPGYVPVSDSRMSAPVVLVIDESLDEPHLHHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDFSEDSVASADVLPGDKSPSQDSLKALIYGTGIYLSPMHASLAVAHSIFSSLRPYKLNVPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFNHPNYPYMEKTALKWMENLGREAHRHNILVDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTAFYIQMLSVEETQSFSLSMETKGDIKGDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAKNHSVAVDMRATIDERIKDIGLKFGSQLPKSKLHCFPKELSLLPELLFHLRRGPLLGCIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELVADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTSEQRTKLKSNFVHFDDPSFCEWMRSLKVVPPQPS 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04893 834 CDD gelsolin_like 687 778 - -
Trre13g04893 834 MobiDBLite consensus disorder prediction 65 81 - -
Trre13g04893 834 CDD trunk_domain 229 472 - -
Trre13g04893 834 Pfam Sec23/Sec24 helical domain 586 682 IPR006900 GO:0006886|GO:0006888|GO:0030127
Trre13g04893 834 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 171 831 IPR037364 -
Trre13g04893 834 MobiDBLite consensus disorder prediction 21 39 - -
Trre13g04893 834 Gene3D Sec23/Sec24 helical domain 574 693 - -
Trre13g04893 834 MobiDBLite consensus disorder prediction 95 117 - -
Trre13g04893 834 SUPERFAMILY beta-sandwich domain of Sec23/24 21 583 - -
Trre13g04893 834 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 687 827 IPR036180 -
Trre13g04893 834 MobiDBLite consensus disorder prediction 1 117 - -
Trre13g04893 834 Pfam Sec23/Sec24 trunk domain 237 463 IPR006896 GO:0006886|GO:0006888|GO:0030127
Trre13g04893 834 SUPERFAMILY vWA-like 236 468 IPR036465 -
Trre13g04893 834 FunFam Protein transport protein SEC23 701 798 - -
Trre13g04893 834 SUPERFAMILY Zn-finger domain of Sec23/24 173 217 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Trre13g04893 834 SUPERFAMILY Helical domain of Sec23/24 585 685 IPR036175 GO:0006886|GO:0006888|GO:0030127
Trre13g04893 834 Gene3D Severin 701 798 IPR029006 -
Trre13g04893 834 MobiDBLite consensus disorder prediction 48 64 - -
Trre13g04893 834 Gene3D von Willebrand factor, type A domain 235 480 IPR036465 -
Trre13g04893 834 Pfam Sec23/Sec24 beta-sandwich domain 481 572 IPR012990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04893 Trre-Chr13 55319993 55324769 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04893 - - gmx:100781518 1431