Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04886 ATGAGAATTCATGGTAGATTTCTCAATCTCCGTTATCTTTTTCGGTTGCGGAATCACTTGGAATCAAACTCCGAACTTCCACTTCGAAATTTTCTGCTTCGTTCTTACTCTTCCGAAGTGCAACCTGAAATTTCGCCGGATCTGTTAAACATAATGGAACAAAGATTTTCTGCTATTAAGCATAGGGCTACTTGTCTTGACAATCTTATGAATCAGCCGGAAGCGACACCGGCAGAGTATGCAAGAGCTAACAAAGAGCTTAGAAAGCTGAGTGGTTCTGTGCAACTTATTAATGAGTTGAAGGCTAAACAGAAGGAAATTGATGGCTTGAAGTCACTAATGACTGAATGTTCTGAAGACAAAGACATGCTTGATATGGCAACAGAGGAATTGGGCCAGGCCATAGAGGAAGAAAGAAAACTGCAGAATTTGCTGTTGAAGTCATTACTTCCTAAGGATGATGCTGATGAAAGAGATTGCATTTTGGAGGTACGAGCAGGGACTGGTGGGGAGGAGGCTTCTTTGTTTGCAATGAATATCTTTAAGATGTACGAGAAGTATGCTCACAACAAAGGCTGGAAGTTTGAAGTAGTAGATATAGCTCAATCTGATATGAAGGGATTCAAGGAGGCTAGTGCAGCAATTGTAGGAGTTGGTGTTTTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTACAGCGAGTTCCTGTGACGGAAAAAATGGGACGTGTTCATACCAGTGCTGTTTCTGTTGCAATTCTCCCTCAGGCTGATGAGGTCGATGTTCAGTTAAAGAATGAAGAGTTGAGAGTTGATACATATAGATCTGGTGGTTCTGGTGGTCAGCATGCAAATACAACTAACAGTGCAGTTAGAATAACTCACCTTCCAACCGGAATCGTGGTTGCTATACAAGATGAGCGTTCTCAGCATATGAATAAAGCCAAAGCTCTCAAGGTACTGTGTGCAAAGCTATATGAAATGGAAAGGCTCAGACTTCAAAGTAGTCGATCAAAGCTTCGATCAGAGCAGATTGGTAGTGGGGACAGATCTGAACGCATCCGAACATACAATTATCCTCAAGGCCGTGTAACTGATCATAGAGTTGGTATCACATATCACAACATAGAAGATGTGATGCAAGGAGAGAATCTTGATGTATTCATTGATGCCCTTCTTCTGAAAGAAGAAATGGATGCAATTGCAACTTTTACTTCGTCTACATAA 1230 0.4114 MRIHGRFLNLRYLFRLRNHLESNSELPLRNFLLRSYSSEVQPEISPDLLNIMEQRFSAIKHRATCLDNLMNQPEATPAEYARANKELRKLSGSVQLINELKAKQKEIDGLKSLMTECSEDKDMLDMATEELGQAIEEERKLQNLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMNIFKMYEKYAHNKGWKFEVVDIAQSDMKGFKEASAAIVGVGVFGKLKFESGIHRVQRVPVTEKMGRVHTSAVSVAILPQADEVDVQLKNEELRVDTYRSGGSGGQHANTTNSAVRITHLPTGIVVAIQDERSQHMNKAKALKVLCAKLYEMERLRLQSSRSKLRSEQIGSGDRSERIRTYNYPQGRVTDHRVGITYHNIEDVMQGENLDVFIDALLLKEEMDAIATFTSST 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04886 409 Coils Coil 93 113 - -
Trre13g04886 409 Gene3D - 47 154 - -
Trre13g04886 409 Hamap Peptide chain release factor 1 [prfA]. 52 406 IPR004373 GO:0006415|GO:0016149
Trre13g04886 409 SMART PCRF_a_2 112 227 IPR005139 GO:0006415
Trre13g04886 409 Gene3D - 258 353 - -
Trre13g04886 409 FunFam Peptide chain release factor 1 156 266 - -
Trre13g04886 409 Coils Coil 124 144 - -
Trre13g04886 409 Pfam PCRF domain 60 252 IPR005139 GO:0006415
Trre13g04886 409 Gene3D - 162 390 - -
Trre13g04886 409 FunFam Peptide chain release factor 1 258 353 - -
Trre13g04886 409 PANTHER LD18447P 50 405 - -
Trre13g04886 409 Pfam RF-1 domain 259 369 IPR000352 GO:0003747|GO:0006415
Trre13g04886 409 NCBIfam peptide chain release factor 1 54 405 IPR004373 GO:0006415|GO:0016149
Trre13g04886 409 SUPERFAMILY Release factor 66 396 IPR045853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04886 Trre-Chr13 55296033 55300312 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04886 K02835 - gmx:100800412 653.284