Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre13g04883 | ATGGACGCCAATGAAGCTAGAATTCTGCTCGGTTTCCCGCCCAATTCGCGTCCAACTCCTTCCCAGGTTAAATCAGCTTACAAACAGAAGGTGTGGGAATCTCATCCTGATCTATTTCCATCTCATCAGAAGCCTCTTGCTGAGTCCAAGTTTAAATCAATTTCCGAAGCTTACACATGTCTATTGCCCGGTGGAAAAGGAGAAGCTTCAAATTCAGCTGAATATTGGCGAGTTGTGAGAACCGGAGTTCCAAGAGCCAATGGAGGAAGAAAAAATCATGCCATGATTAAAGTTCCATTCCTTTTACTTATTCTGGGAACAGTTGCGCTCGGTGGGTTCAATGCTTCAAGGGCTTACAAAAGGCAAAAGGAGGACTATCCTTCACACAATCCATTTCTTCCTTGA | 405 | 0.442 | MDANEARILLGFPPNSRPTPSQVKSAYKQKVWESHPDLFPSHQKPLAESKFKSISEAYTCLLPGGKGEASNSAEYWRVVRTGVPRANGGRKNHAMIKVPFLLLILGTVALGGFNASRAYKRQKEDYPSHNPFLP | 134 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre13g04883 | 134 | SMART | dnaj_3 | 4 | 66 | IPR001623 | - | |
| Trre13g04883 | 134 | ProSiteProfiles | dnaJ domain profile. | 5 | 79 | IPR001623 | - | |
| Trre13g04883 | 134 | SUPERFAMILY | Chaperone J-domain | 9 | 76 | IPR036869 | - | |
| Trre13g04883 | 134 | Pfam | DnaJ domain | 10 | 61 | IPR001623 | - | |
| Trre13g04883 | 134 | CDD | DnaJ | 9 | 58 | IPR001623 | - | |
| Trre13g04883 | 134 | PANTHER | DNAJ HOMOLOG SUBFAMILY B | 5 | 87 | - | - | |
| Trre13g04883 | 134 | Gene3D | DnaJ domain | 8 | 95 | IPR036869 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre13g04883 | Trre-Chr13 | 55273765 | 55279906 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre13g04883 | - | - | gmx:100527460 | 235.343 |