Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04876 ATGGCGGAAACCTTTCTATTCACATCTGAATCAGTAAACGAGGGCCACCCCGACAAGCTGTGTGACCAGATCTCCGATGCAGTTCTCGATGCTTGCCTTGAGCAGGATCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACTAACATGGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTAGACTATGAGAAGATTGTCCGTGACACATGCCGCACCATTGGATTCATCTCCGATGATGTTGGCCTTGATGCTGACAAATGCAAGGTCTTGGTCAACATTGAGCAACAGAGTCCTGATATTGCTCAGGGTGTTCATGGCCACTTTACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAGCTTATGCCATTGAGCCATGTCCTTGCAACCAAACTAGGTGCTCGTCTTACTGAGGTTAGGAAGAACGGTACCTGTGCTTGGCTGAGACCAGACGGGAAGACACAAGTTACTGTCGAGTACTATAATGAGAACGGTGCTATGGTTCCAGTCCGTGTCCACACTGTCCTCATTTCTACACAACATGACGAGACTGTCAGTAACGACCAGATTGCCGCTGATCTTAAGGAGCATGTTATCAAGCCTGTGATTCCTGAGAAGTACTTGGATGAGAAGACCATCTTCCACCTTAACCCTTCCGGCCGTTTTGTCATTGGTGGTCCCCATGGTGATGCCGGTCTAACCGGAAGAAAGATCATCATTGATACCTATGGTGGATGGGGAGCTCACGGTGGTGGTGCCTTTTCAGGCAAGGACCCAACTAAGGTTGACCGAAGTGGTGCCTATGTTGTGAGGCAGGCAGCAAAGAGTATCGTTGCTAACGGTCTTGCTCGCAGATGCATTGTTCAAGTTTCATACGCCATCGGTGTGCCTGAGCCTTTGTCGGTCTTTGTTGACAGTTATGGAACTGGAAAGATTCCCGACAAGGAGATTCTACAAATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATTAACTTGGACCTTAAGAGGGGTGGGAACAGGTTTCTTAAAACAGCTGCTTATGGACACTTTGGAAGGGATGACCCTGATTTCACATGGGAAGTTGTGAAGCCACTCAAGTGGGAGAAGCCTCAAGCTTAA 1182 0.4865 MAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRTIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILQIVKENFDFRPGMITINLDLKRGGNRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04876 393 FunFam S-adenosylmethionine synthetase 1 12 117 - -
Trre13g04876 393 SUPERFAMILY S-adenosylmethionine synthetase 241 390 IPR022636 GO:0004478|GO:0006556
Trre13g04876 393 Hamap S-adenosylmethionine synthase [metK]. 3 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04876 393 FunFam S-adenosylmethionine synthase 118 137 - -
Trre13g04876 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 2 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04876 393 Pfam S-adenosylmethionine synthetase, central domain 118 239 IPR022629 GO:0004478|GO:0006556
Trre13g04876 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 120 130 IPR022631 GO:0004478|GO:0006556
Trre13g04876 393 FunFam S-adenosylmethionine synthase 263 381 - -
Trre13g04876 393 NCBIfam methionine adenosyltransferase 6 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04876 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 5 102 IPR022628 GO:0004478|GO:0006556
Trre13g04876 393 FunFam S-adenosylmethionine synthase 138 242 - -
Trre13g04876 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 267 275 IPR022631 GO:0004478|GO:0006556
Trre13g04876 393 CDD S-AdoMet_synt 6 384 - -
Trre13g04876 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 241 381 IPR022630 GO:0004478|GO:0006556
Trre13g04876 393 SUPERFAMILY S-adenosylmethionine synthetase 116 240 IPR022636 GO:0004478|GO:0006556
Trre13g04876 393 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04876 393 Gene3D - 12 280 - -
Trre13g04876 393 Gene3D - 118 381 - -
Trre13g04876 393 Gene3D - 5 243 - -
Trre13g04876 393 SUPERFAMILY S-adenosylmethionine synthetase 4 110 IPR022636 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04876 Trre-Chr13 55221151 55222332 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04876 K00789 - gmx:100777770 776.933