Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04873 ATGGTGATTGAAGAAGATCAACGCTTAACTGAATGTCGTCTTCATCGTGGTCCTTACCTTGGCGACATCTCAGCTCTCTGTTTTCTTCATCTTCCCAATCATTCTCTTCCTCTTCTTCTAGCTGGTTTGGGTTCGGAAATTCTGTTATACGACTTAGAACTTGGAAAGATAATGAGATCATTTTCGGTTTTTGATGGAGTTCGTGTTCACGGGATTACTTCTAGTTCTGAATCTGTAATTGCTGTGTTTGGAGAAAAAAGAGTTAAACTGTTTAGTTTTTCATTTGAAAATGATGATTCTGGGAGGCCATTGTTAACGTTGATTCATTTGTTGCCGAAATTTGGTCACTGGGTTTTAGATGTTTGCTTCATCAAGGGTTATTTACCTTGTTCGAATGTGGAGAGTGATTTTCTGGCTATAGGATGTAGTGACAATTCAGTTCACATATGGGACATTTCCAGTTCTAGTACTGTTCTCAAGGTTCAATCACCAGTACAATGCCTTCTGTACACAATGAGATTATGGGGTCACAATCTTGACGTTCTCCGTATTGCATCCGGTACAATATTTAATGAGATTGTTGTTTGGAAAGTGGCCCCTCAACATGATAAAGCTTCAAGAACTCCAGAAGACCATGACCATCAGGGCTCCAATTGCAGCCCACCAAAAGACAATCTGTATGAGGCTTTTCACATATGTAAACTTGTTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCGTCCTGTGGATCTAAACTGGTATCTGTTTCTGATGACCGTAGCGCACGTGTCTGGGATGTTCCTATTGAAAGTGAAGACTCATTGTACCATGATCCCATTGCCACCGTCTTATTTGGACATAATGCTCGAGTTTGGGACTGCTGTATTTCTGATAATTTTATTGTCACTGTCAGCGAGGATTGTACATGTCGTATATGGGGAATTGATGGTGAACAGCTGCAAGTCATTAGGGAGCACATAGGAAGGGGTATATGGAGATGTTTGTATGACCCAAATTTGTCAATTGTTATAACTGCTGGGTTTGACTCTGCTATCAAGGTGCATAGGCCTCATGCTTGTCTGTCCAGAGGTTTGGAAGCAGCACAATTGTCCCCTGACAGAACAGAGATATTTTCCATTAGCATCCCTGATGTGTTGGAGCATATTGGATTGATGGACAGCAAGAGTGAATACGTTCGTTGTTTGCGTTTTTCTTCTCAGGATTCTCTTTACGTTGCTACCAATCATGGTTATCTCTACCATGCTAAATTATATGAGGCTGGAGGCGCTCATTGGAATCAGCTTGTTCAGGTCTGCAACGGGGCTCCAATTATCTGTATGGATTTATTGTCCAAGGACTCATTTGAACTTGGATGTGGTGAGGAGGATTGGATCGCCGTTGGAGATGGCAAAGGAAATATGACAGTTATTGGAGTTACAAAGAATGATTGTACTCCTACAGTTAGATTGAGCTTTACTTGGCAAGCTGAAGTGGAGAGACAACTCTTGGGTACTTATTGGTGCAAATCTTTGGGATGTAGGTATGTCTTTACGGCTAACCCTAGAGGAGGATTGAAACTCTGGAGGTTGCCTGACCCTTCACAATCAAATAGTGAGATCTCTGTGAAGAATAACATTGTGTCACACGCAGCAGAGTTCATATCAAGTTATGGGATGCGGATAATGTGTTTGGATGCATGCTTGGAAGAAGAGGTCCTAGCATGTGGAGATGTACGTGGTAATATGGTTTTATTTCCTTTGCTAAAGAATCTGGTGTTGGGCACATCTGTTGCACAAGAGATGAAAATACCCCCAGTAAATCATTTTAAAGGAGTTCACGGGATTTCAAGTGTCTCCAGTGTTGTTGTGACTAAGCTTGTTTACAATCAAATCGAGATACGCTCAACTGGAGCAGATGGTTGTATATGCTATCTGGAATATGATAGAGAAATGCAGAATTTTCAATTTACGGGGATGAAACAAGTGAAAGAATTGACTTTGATTGAGCATGTTTCTGTTGATAGCTCCGAAGATGCATCATCAAGAAGCTATGCAGCAGGTTTTGCATCTGTAGATTTTATAGTATGGAACTTAGCCAATGAGAATAAGGTGATGAAAATTCCATGTGGTGGCTGGCGGCGCCCTCATTCCTATTTTCTTGGTGACGTACCAGAGATGAAGAACTGTTTTGCCTTTGTTAAGGATGAAATTATATATATACACAGACACTGGGTTAATGATAACAATGGGAAGATATACCCTATGAGTTTGCATATGCAATTCCATGGAAGAGAGATACATTCCTTGTGCTTTATATATGAAGATATGCTTCTCGGAGATAATTATAAACATGCATTATTTTCTAAATCAAGTTGGATTGCAACTGGATGTGAAGATGGGACTGTGAGATTGACTTGGTACTCTCCAGGTATTAAGAATTGGTCCATGTCAAAATTGCTTGGTGAGCATGTCGGAGGATCAGCTGTACGCTCAATTTGTTGTGTCTCAAAACTACACATCATTCCTTCAGTTACAAGCAATGTACCTGATGAGGGGAGCGAACTAATTGCTGCAAATGAGGACAAAGATAATCCAACTTTACTAATATCTGTGGGTGCAAAGCGGGTCTTAACTTCTTGGTTACTTAAAAGTAAGAGGGACAACAAAACTGATTTACTAACTGATAATCAGCATAATTTAAAAGAAGTTGATGATCAAATTTTGTCAAATTTGTCCTCTTCAATGACGTTCCAGTGGTTATCCACTGACATGCGAACCAAACATTCAACTACACGCAGATATGCAGAAAATAAAGTAGTTGGTGTTGCTGAAAATGATTCTAATATAAAAGTTGGCGCTGAACCTGGATCACTGGTTTCTGAAGGCGGAGTGATGAACTTGGCCAGAGATAAATATGAGGATGACTGGAGATATCTTGCAGTTACTGCTTTTCTTGTTAAATGTGCTGGCTCCAGGATATCTGTCTGTTTTGTTGTTGTTGCTTGTTCAGATGCTACAGTTATGTTACGGGCTTTAGTTTTGCCCTTTCGCTTATGGTTTGACATCGCATTACTCGTTCCTTTGTTGGCACCTGTTTTGTCTCTGCAGCATATCATCTTTCCCATTCGTGGGACTCGTAAAGATAACATACAAGTTGGAAATGGTTACATTGTGATTAGTGGATCTACTGATGGGAGTGTTACATTTTGGGACTTGACTGACAGTGTGGAAGCTTTTATGCTTAGAGTTTCAGTTTGTGATGTAGAGAAGCTTTTTGACTGTCAAAAACGACCACGCACGGGGAGAGGAAGTCAGGGTGGTAGACAGTGGAGATCTTTAAGAAGTGGGTTATCAAAGAAAAGACAAGATAACAATTTGGCGACTTCAAAAGCAAAAAACAATCCCGAAAGCATCAATTCTGCTACACATGGGATCTCTTCAGTGCCAAATAAATCTGAAGACAGCACTATGGTTTGTTCTCAAGCCATGCATACAGCTTCCCCTGAGTTAGAAACTAAGACTGATGATTCATCAATGGAAATATGTGAAATACAGTCTCTACGCCTTTTAAAAAATGTTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAAGGTGGGCAAAATAATGATACTTCTTGTGTGTACAGCATAGTTAGTGGGGGTGATGATCAATCAATTCATCATCTTGTGGTTGAATTATCACCTAAAACAATAACCCCAGATGTAACACATTTGGTCACTGGACCTGAATATATAAAGGACTCCAATTTTCTAAATCAGAGTAGAAGCTACGATATCAGATTCTTAAATTCTGAAAAGTTTCCTTCGGCCCATAGCTCTTCTGTGAAAGGTGTCTGGACGGATGGATCTTGGGTGTTTTCGACTGGACTTGATCAGCGGGTCAGATGCTGGCATCTTCACCAGAATAAACTAATAGAACGTGCACACCTAATAGTTAGTGTGCCGGAGCCAGAAGCATTATCTGCTAGGGCTTATAGCAGGAATCATTATCAAATTGCTGTTGCCGGAAGAGGGATGCAAATAGTGGATTTCTCGGGATGCTAA 4077 0.405 MVIEEDQRLTECRLHRGPYLGDISALCFLHLPNHSLPLLLAGLGSEILLYDLELGKIMRSFSVFDGVRVHGITSSSESVIAVFGEKRVKLFSFSFENDDSGRPLLTLIHLLPKFGHWVLDVCFIKGYLPCSNVESDFLAIGCSDNSVHIWDISSSSTVLKVQSPVQCLLYTMRLWGHNLDVLRIASGTIFNEIVVWKVAPQHDKASRTPEDHDHQGSNCSPPKDNLYEAFHICKLVGHEGSIFRIAWSSCGSKLVSVSDDRSARVWDVPIESEDSLYHDPIATVLFGHNARVWDCCISDNFIVTVSEDCTCRIWGIDGEQLQVIREHIGRGIWRCLYDPNLSIVITAGFDSAIKVHRPHACLSRGLEAAQLSPDRTEIFSISIPDVLEHIGLMDSKSEYVRCLRFSSQDSLYVATNHGYLYHAKLYEAGGAHWNQLVQVCNGAPIICMDLLSKDSFELGCGEEDWIAVGDGKGNMTVIGVTKNDCTPTVRLSFTWQAEVERQLLGTYWCKSLGCRYVFTANPRGGLKLWRLPDPSQSNSEISVKNNIVSHAAEFISSYGMRIMCLDACLEEEVLACGDVRGNMVLFPLLKNLVLGTSVAQEMKIPPVNHFKGVHGISSVSSVVVTKLVYNQIEIRSTGADGCICYLEYDREMQNFQFTGMKQVKELTLIEHVSVDSSEDASSRSYAAGFASVDFIVWNLANENKVMKIPCGGWRRPHSYFLGDVPEMKNCFAFVKDEIIYIHRHWVNDNNGKIYPMSLHMQFHGREIHSLCFIYEDMLLGDNYKHALFSKSSWIATGCEDGTVRLTWYSPGIKNWSMSKLLGEHVGGSAVRSICCVSKLHIIPSVTSNVPDEGSELIAANEDKDNPTLLISVGAKRVLTSWLLKSKRDNKTDLLTDNQHNLKEVDDQILSNLSSSMTFQWLSTDMRTKHSTTRRYAENKVVGVAENDSNIKVGAEPGSLVSEGGVMNLARDKYEDDWRYLAVTAFLVKCAGSRISVCFVVVACSDATVMLRALVLPFRLWFDIALLVPLLAPVLSLQHIIFPIRGTRKDNIQVGNGYIVISGSTDGSVTFWDLTDSVEAFMLRVSVCDVEKLFDCQKRPRTGRGSQGGRQWRSLRSGLSKKRQDNNLATSKAKNNPESINSATHGISSVPNKSEDSTMVCSQAMHTASPELETKTDDSSMEICEIQSLRLLKNVHQSGVNCLHVSEIKGGQNNDTSCVYSIVSGGDDQSIHHLVVELSPKTITPDVTHLVTGPEYIKDSNFLNQSRSYDIRFLNSEKFPSAHSSSVKGVWTDGSWVFSTGLDQRVRCWHLHQNKLIERAHLIVSVPEPEALSARAYSRNHYQIAVAGRGMQIVDFSGC 1358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04873 1358 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 160 IPR001680 GO:0005515
Trre13g04873 1358 PANTHER WD REPEAT PROTEIN 16 1357 - -
Trre13g04873 1358 MobiDBLite consensus disorder prediction 1120 1154 - -
Trre13g04873 1358 SUPERFAMILY WD40 repeat-like 1055 1321 IPR036322 GO:0005515
Trre13g04873 1358 Gene3D - 275 360 IPR015943 GO:0005515
Trre13g04873 1358 Gene3D - 361 887 IPR015943 GO:0005515
Trre13g04873 1358 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Trre13g04873 1358 SUPERFAMILY WD40 repeat-like 514 838 IPR036322 GO:0005515
Trre13g04873 1358 SMART WD40_4 317 357 IPR001680 GO:0005515
Trre13g04873 1358 SMART WD40_4 755 807 IPR001680 GO:0005515
Trre13g04873 1358 SMART WD40_4 1036 1072 IPR001680 GO:0005515
Trre13g04873 1358 SMART WD40_4 228 267 IPR001680 GO:0005515
Trre13g04873 1358 SMART WD40_4 104 151 IPR001680 GO:0005515
Trre13g04873 1358 SMART WD40_4 1271 1309 IPR001680 GO:0005515
Trre13g04873 1358 SMART WD40_4 278 315 IPR001680 GO:0005515
Trre13g04873 1358 Gene3D - 228 274 IPR015943 GO:0005515
Trre13g04873 1358 Gene3D - 3 227 IPR015943 GO:0005515
Trre13g04873 1358 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 268 IPR001680 GO:0005515
Trre13g04873 1358 MobiDBLite consensus disorder prediction 1098 1154 - -
Trre13g04873 1358 ProSiteProfiles Trp-Asp (WD) repeats profile. 1055 1081 IPR001680 GO:0005515
Trre13g04873 1358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 268 - -
Trre13g04873 1358 Pfam WD domain, G-beta repeat 285 314 IPR001680 GO:0005515
Trre13g04873 1358 Pfam WD domain, G-beta repeat 234 267 IPR001680 GO:0005515
Trre13g04873 1358 Pfam WD domain, G-beta repeat 115 151 IPR001680 GO:0005515
Trre13g04873 1358 Gene3D - 997 1332 IPR015943 GO:0005515
Trre13g04873 1358 SUPERFAMILY WD40 repeat-like 136 531 IPR036322 GO:0005515
Trre13g04873 1358 SUPERFAMILY WD40 repeat-like 22 204 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04873 Trre-Chr13 55192739 55209276 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04873 K24737 - gmx:100780968 2048.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04873 13 55192739 55209276 Trre13g04873 13 55192739 55209276 ECH