Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04870 ATGATGAAGCAAAGGTTGGAAGGTAAGGTAGCTATGATCACTGGATCAGCCAGTGGAATTGGGGAAGAAGCAGTGAAATTGTTTGTTGAAAATGGAGCATTTGTTGTAGCAGTAGATATTCAAGATGAATTGGGTCAACAAGTTGTAGCTTCAACAGGCTCAAACAAAGTAACATATCATCATTGTGATGTAACAAATGAAAAACAAGTTGAAGAAACTATCAATTTCAGTTTGGAAAAATATGGTCACATAGATATCTTATTCAGCAATGCCGGAATATTAGGCTCTTTATCGAGCATACTTGAATTTAATCCGAATGAATTTAAGAACATGATAGATATAAACGTTGTTGGTGCAGCAATTATGATTAAACATGCGGCACGCGCCATGGTTGCGAAAAACATTCATGGATCCATCATATGCACCACAAGTGTGGCAGCTTCTATTGGTGGAGCAGCTCCTAGTGGTTATACAACATCAAAACATGCTCTTTTGGGACTAGTTAGAGCAGCATGTAGTGAACTTGGAGGTTATGGAATTAGAGTGAATAGTGTATCCCCTTTTTCACTTGCAACACCTCTTTCATGTGCAAATTTCAATATTAAGCCTGAATTTATGGAAGCTTTGACGTGTTCTAAGGCTAATTTGAAGGGTATTGTGTTGAAGGCTAAGCATATTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTATATCAGTGGTCAAAATTTGGTTGTTGATGGTGGCTACTCTATCGTTCGTAATACTTCTTCCCCTGTCACACCTCCTAACATGTAG 804 0.3831 MMKQRLEGKVAMITGSASGIGEEAVKLFVENGAFVVAVDIQDELGQQVVASTGSNKVTYHHCDVTNEKQVEETINFSLEKYGHIDILFSNAGILGSLSSILEFNPNEFKNMIDINVVGAAIMIKHAARAMVAKNIHGSIICTTSVAASIGGAAPSGYTTSKHALLGLVRAACSELGGYGIRVNSVSPFSLATPLSCANFNIKPEFMEALTCSKANLKGIVLKAKHIAEAALFLASDEAVYISGQNLVVDGGYSIVRNTSSPVTPPNM 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04870 267 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 257 - -
Trre13g04870 267 FunFam Short-chain dehydrogenase reductase 1 257 - -
Trre13g04870 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Trre13g04870 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Trre13g04870 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Trre13g04870 267 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Trre13g04870 267 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Trre13g04870 267 Gene3D - 1 261 - -
Trre13g04870 267 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Trre13g04870 267 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Trre13g04870 267 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Trre13g04870 267 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Trre13g04870 267 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Trre13g04870 267 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04870 Trre-Chr13 55178643 55179728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04870 6 254 Acyl Lipid Metabolism Gene Families AT3G55290 27.863 1.45e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04870 - - gmx:100811279 374.015