Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04869 ATGTTCAGCAATGTTGGGATACCAGGTCCTTTGTCTAGCATACTAGAATTTGATCTAAATAAATTTGACAACACCATGGCCGTTAACGTTCGTGGATCAGCCGCAACTATCAAGCACGCTGCGCGTGCCATGGTGGAAAGAAAAATACGCGGATCTATAATTTGTACGGCCAGTGTGGCTGGCTCTGTTGCTGGATGTGCAGGACATGATTACACGGCATCCAAACACGGTCTTATAGGACTCGTTCGCTCAACGTGCAGCGAGCTTGGAGTTTATGGAATAAGAGTGAATTCAATTTCACCGTATGCTGTTGCCACACCTCTTGCATGTAGAGGATTGGACATGGATGTGAGTGAAGTTGAAGCTATTGGGAATGATTATGCAAATTTGAAAGGAATTACATTGAAGACTACTCATATTGCAGAAACTGCTTTGTTTCTTGCTTCTGATGAATCAACTTATATTAGTGGACACAACTTGGTGGTCGATGGAGGATTCTCGGTTATCAATCATTGTCTTCCTAGTATTAAAAAATAA 537 0.4209 MFSNVGIPGPLSSILEFDLNKFDNTMAVNVRGSAATIKHAARAMVERKIRGSIICTASVAGSVAGCAGHDYTASKHGLIGLVRSTCSELGVYGIRVNSISPYAVATPLACRGLDMDVSEVEAIGNDYANLKGITLKTTHIAETALFLASDESTYISGHNLVVDGGFSVINHCLPSIKK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04869 178 PRINTS Glucose/ribitol dehydrogenase family signature 71 90 IPR002347 -
Trre13g04869 178 PRINTS Glucose/ribitol dehydrogenase family signature 130 150 IPR002347 -
Trre13g04869 178 PRINTS Glucose/ribitol dehydrogenase family signature 92 109 IPR002347 -
Trre13g04869 178 PRINTS Glucose/ribitol dehydrogenase family signature 45 61 IPR002347 -
Trre13g04869 178 Pfam Enoyl-(Acyl carrier protein) reductase 2 167 - -
Trre13g04869 178 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 58 86 IPR020904 GO:0016491
Trre13g04869 178 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 168 IPR036291 -
Trre13g04869 178 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 172 - -
Trre13g04869 178 Gene3D - 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04869 Trre-Chr13 55175090 55175886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04869 1 165 Acyl Lipid Metabolism Gene Families AT3G55290 31.977 1.46e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04869 - - tpra:123891074 292.352