Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04855 ATGGATGCGAAAGATATACTTGGATTGCACAAAACCTCATTCCCATCTTCAATTGAAAAAAAATCTCGACCTCCAAAAGAGTCTCAGAGAAAACCTGATGGCATTTCACGCGAGGTTTATGCACTTACTGGTGGAATGCCATCACTTATGCCTTCAATTGATGCTTCTCAATTGAAAAAGAAGCATTCTCCTCACGAAAAGGTTACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTTTATCATTGGGTTCGAATAGTTAATGGTGTTCTACCTACTGGGGACTATTCTTTTGCCAAGTATAATAAGTCTGTTGACATTATCAAATACACAGACGAGGAGTATGAAAAGTATTTGACAGATCCTATGTGGACCAAGGAGGAGACAAATGAACTATTCGACTTGTGTGAGAGGTTCGATCTCCGTTTTGTTGTAATAGCTGATAGATTCTCATCATCTCGGACTGTAGAGGAATTAAAGGATCGATATTATAGTGTGTTGCGGGCTATATTACTTGCTAGAGCTGCATCTTCTGGAGATGTTACAACACATCCTCTCATTAAGGAGTCATATAATGTTTCACAAGAAATGGAGCGAAAACGGGCACTGTCCATGGTCCTCTCACAAACAAGACAACAAGAGAAAAGAGATGAAGAGGTTCTTATTGAAGCAAAAAGAATAGCTGAGTTACGGATGGCTTCTAAGGTTACTGAACAGTCTCAATTGGTTGTTGCTACAAATGCTGATGCAGAAGTTACAGAGAGGGCTGTCCCCGGTGAATCTCCATCGAATGTGCAACTTCCACCAATGGCTGTGCCTTCTCCATTTACAGATAATGCTTCTACTTTAGCTTCTCTTCGCATGCTTCGTGTATATTTGAGGACATATGCACTTGAGCAAATGGTGCAAGTTTCAAACTCATCCGCTGGAGTTCGGACTATCAAACGGGTTGAGCAAACATTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTGGAACTAAGAAAAGAAATACTAACTTGGCTGAATCTCCAGAAACAGGTGCAATATAAAGAGGCCGAAGGTTCATCTTATCGTGATGGGACCTACGGTGAAACACCAGACACACCAAAGGATCGTACATTTATTCCCGACTCGTTGAATTTTGGAGTTACAGGCGAAAGGGTTGGCAAAAAGGACCAAAAACGCAAGGGGCATGGAGCTCAACCTACAGCTGCTCATAAAAGACCTAGAAAACAAAAGGCCTCAGATCTTTAA 1305 0.4153 MDAKDILGLHKTSFPSSIEKKSRPPKESQRKPDGISREVYALTGGMPSLMPSIDASQLKKKHSPHEKVTWQWLPFTNSARKDDLHLYHWVRIVNGVLPTGDYSFAKYNKSVDIIKYTDEEYEKYLTDPMWTKEETNELFDLCERFDLRFVVIADRFSSSRTVEELKDRYYSVLRAILLARAASSGDVTTHPLIKESYNVSQEMERKRALSMVLSQTRQQEKRDEEVLIEAKRIAELRMASKVTEQSQLVVATNADAEVTERAVPGESPSNVQLPPMAVPSPFTDNASTLASLRMLRVYLRTYALEQMVQVSNSSAGVRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSYRDGTYGETPDTPKDRTFIPDSLNFGVTGERVGKKDQKRKGHGAQPTAAHKRPRKQKASDL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04855 434 SUPERFAMILY Homeodomain-like 126 177 IPR009057 -
Trre13g04855 434 FunFam DNA methyltransferase 1-associated protein 1 98 185 - -
Trre13g04855 434 SMART sant 126 175 IPR001005 -
Trre13g04855 434 MobiDBLite consensus disorder prediction 16 34 - -
Trre13g04855 434 Pfam SANT/Myb-like domain of DAMP1 102 176 IPR032563 -
Trre13g04855 434 MobiDBLite consensus disorder prediction 14 34 - -
Trre13g04855 434 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 424 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Trre13g04855 434 MobiDBLite consensus disorder prediction 369 434 - -
Trre13g04855 434 Gene3D - 99 186 - -
Trre13g04855 434 CDD SANT_DMAP1_like 130 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04855 Trre-Chr13 55050690 55055436 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04855 K11324 - gmx:100818926 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04855 13 55050690 55055436 Trre13g04855 13 55050690 55055436 ECH