Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04852 ATGGCGACTCTAACTCCAATTTGTTCGTTAACAACCAAATTCAATTTCAGTGGCCAACACAACCACCACGCTAATAATCTCAATTTCGCAACTCCAAATCTCAACAGAACAAGTTTAAGAAAACTAATCCGTTTAGTCTCTTCCGCTAACCAGAACCAGTCATCACCGGGATTATACTCCGCCACGAAATTCGACCTAACCGCTTCCAACGTCGATCTCGTTCTTGAAGATGTTCGTACTTACCTCATCTCTGACGGAGGAAACGTCGATGTTGTGTCCGTTGAAAACGGTGTCGTTTCTCTTAAGCTACAAGGAGCTTGCGAAAGTTGTCCTAGCTCAACCACGACGATGAAAATGGGAATCGAACGCGTTCTTAAAGAAAAATTTGGTGATTCCATTAAAGATATCGTTCAAGTTTACGATGATGATCAAGCTAGAGAAACTACCGTTGAGGCGGTGAATAATCATTTAGAGATATTAAGACCGGCGATTAAGAATTACGGAGGTAGCGTGGAAGTGTTATCTGTTGAAGGTGGTGATTGTGTTGTGGAGTATGTTGGACCTGAATCAATTGGATCAGGTGTGAAAGCTGCTATCAAAGAGAAGTTTCCAGATATTCTCAATGTTACATTCTCCACCTAA 642 0.4174 MATLTPICSLTTKFNFSGQHNHHANNLNFATPNLNRTSLRKLIRLVSSANQNQSSPGLYSATKFDLTASNVDLVLEDVRTYLISDGGNVDVVSVENGVVSLKLQGACESCPSSTTTMKMGIERVLKEKFGDSIKDIVQVYDDDQARETTVEAVNNHLEILRPAIKNYGGSVEVLSVEGGDCVVEYVGPESIGSGVKAAIKEKFPDILNVTFST 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04852 213 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 147 210 IPR034904 -
Trre13g04852 213 Gene3D - 63 148 IPR034904 -
Trre13g04852 213 Pfam NifU-like domain 72 132 IPR001075 GO:0005506|GO:0016226|GO:0051536
Trre13g04852 213 FunFam NifU-like protein 1 chloroplastic 148 211 - -
Trre13g04852 213 FunFam NifU-like protein 3, chloroplastic 63 146 - -
Trre13g04852 213 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 47 211 - -
Trre13g04852 213 Gene3D - 149 211 IPR034904 -
Trre13g04852 213 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 69 140 IPR034904 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04852 Trre-Chr13 55045321 55046510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04852 K22074 - gmx:100527356 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04852 13 55045321 55046510 Trre13g04852 13 55045321 55046510 ECH