Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04847 ATGGCGAATATTCCCGATCCAGATATCGACGACGATTTTAGCGACCTTTACAAAGAGTACACTGGTCCTCCAGGATCTGGATCTACTCAAGAGAGAGCAAAATCAAACAAAAGGTCAAATGCAGGTTCTGATGAAGAAGATGAAGTTCGTGATCCTAATGCTATCCCTACTGGTTTCATCAGCCGTGATGCTAAGGTTTGGGAAGCTAAATCCAAAGCTACTGAGAGAAATTGGAAGAAAAGAAAAGAAGAAGAAATGATCTGCAAACTTTGTGGTGAATCAGGGCATTTCACTCAGGGTTGCCCATCTACCCTTGGGGCAAACAATAAGTCTCAAGAATTATTTCAAAGGATACCCGCAAGAGACAAAAATGTAAGAGCACTTTTCACAGAGAAAGTTCTAAGTAAAATTGAAAGGGATATTGGCTGCAAAATTAAGATGGACGAGAAATTCATTATTGTCAGTGGTAAGGATAGGTTAGTTTTGTCAAAAGGTGTTGATGCTGTGCATAAGATTAGAGAGGAAGTTGAACAAAAAGGATCTTCCAGTTCTCGCATGAATCGATCAAGGTCACCACCACCTCACCGATCAAGGTCACCACCACCTCAGAGAAGTCCTGTTAATGCCCGGTTTCAGCGCTCTGAGCCCCAGAGATCTAATTCTGCACCACGGAATACACCTCAGTTTCCACAAAGGTTTGGTAGACAAGAGAGGGCCGCTGATGATCGTGTTCGTGAGGACACTCAGAAGTTTGCAAGAGATTCTCCACAAGCAAGAGCTTATGGGAATAGTGCACCTAGAGGTCGTTCAAGCCAGTCAAGATCTCCAAGACAGGCTCCACATTCAGGGAACTCTTATAATTCATTTGATGGCCGAAGTCACAACATGAGTACTTACAAGAATGATGGGTGGGATTCTCATAGGAGAGAATCAGGTATCCAACCCGGTCAGCAGTTTGATCACAATGCCCCACCTCAGTCTCTAGAAGATTTGGAATTAGAGTATAAAAAGGAGGCAATGGAGCTAATGAAAATTCGTGACAGAGAAGAAGATGAAGAAAATTTCCAGCATCGTGAGGCTATTCGAGATATGAGGGAGAAGTACATGAACAAAGTTGCTTTGTTGAGTGCCGCACATGCAAAACAATGGGAAGACTTTTGTCAGCTTGATGCCCAGAGACGTCAACAACAGACCATCCAGCAAATGTCTCCTGGATATCGGGGTTATAAGCAGCAGAATTTTGCTGACTATGATAGAGGCGTGGAGATTTCGCAAAAGCTTACAACCGATATTAAAATTCTTTTTATCAAGCGGTTCCTGATTGATCGAGTAGGTGTTAAATGA 1344 0.4286 MANIPDPDIDDDFSDLYKEYTGPPGSGSTQERAKSNKRSNAGSDEEDEVRDPNAIPTGFISRDAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANNKSQELFQRIPARDKNVRALFTEKVLSKIERDIGCKIKMDEKFIIVSGKDRLVLSKGVDAVHKIREEVEQKGSSSSRMNRSRSPPPHRSRSPPPQRSPVNARFQRSEPQRSNSAPRNTPQFPQRFGRQERAADDRVREDTQKFARDSPQARAYGNSAPRGRSSQSRSPRQAPHSGNSYNSFDGRSHNMSTYKNDGWDSHRRESGIQPGQQFDHNAPPQSLEDLELEYKKEAMELMKIRDREEDEENFQHREAIRDMREKYMNKVALLSAAHAKQWEDFCQLDAQRRQQQTIQQMSPGYRGYKQQNFADYDRGVEISQKLTTDIKILFIKRFLIDRVGVK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04847 447 MobiDBLite consensus disorder prediction 37 52 - -
Trre13g04847 447 MobiDBLite consensus disorder prediction 235 253 - -
Trre13g04847 447 MobiDBLite consensus disorder prediction 202 232 - -
Trre13g04847 447 Coils Coil 328 348 - -
Trre13g04847 447 PANTHER OS01G0252900 PROTEIN 1 418 - -
Trre13g04847 447 MobiDBLite consensus disorder prediction 264 300 - -
Trre13g04847 447 SUPERFAMILY Retrovirus zinc finger-like domains 75 109 IPR036875 GO:0003676|GO:0008270
Trre13g04847 447 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
Trre13g04847 447 MobiDBLite consensus disorder prediction 1 57 - -
Trre13g04847 447 MobiDBLite consensus disorder prediction 174 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04847 Trre-Chr13 55013219 55016725 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04847 - - vun:114191959 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04847 13 55013219 55016725 Trre13g04847 13 55013219 55016725 ECH