Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04843 ATGGCTCCTCCCAATGAACCAGTGAATTCCAGAACTCTTGATCTCGTCAAAACAGAGTCTTTATATGATTTATCTGAAGGAAAATTTACTGTGAAAGGTGTTCCTTTGTTGCATGATGTTCCTGAGAATGTTTTTTTCAGTTCTTTTTCTTCTATTTGCAAACCCTCTGAATCAAATGCCCCACCTTCACTCCTTCAAAAAATTCTTGCTTTTTCTCACAAAGGTGGTTTCTTTGGATTCAATAACAAAACCCCATCTGATAGATTGATGAATTCATTGGGTAGTTTCAATGGAAAAGATTTTGTGAGTATTTTCAGGTTCAAAACATGGTGGTCTACTCAATGGGTTGGAAACTCTGGTTCTGATTTACAAATGGAAACTCAATGGATTCTTTTAGAAATTCCTGAAATCAAATCCTATGTTGTAATCATTCCTATAATTGAAAAAGGTTTTAGATCAGCACTTTTTCCTGGTTCTAATGATCATGTAATGATTTGTGCTGAAAGTGGTTCACTAAAGGTGAAAGAATCAAGTTTCAATTCAATTGCTTATGTTCATTTTGATGAAAATCCTTATGATTTGATGAAAGAAGCTTATAGTGTTTTAAGGGTTCATCTCAACACTTTTAGGCTATTGGAAGAGAAAACAGTCCCAAATTTAGCTGATAAATTTGGTTGGTGTACTTGGGATGCTTTCTATTTAACTGTTAATCCTATTGGTGTTTTTCATGGTCTTGATGATTTTACAAAAGGCGGCATCGAACCGAGGTTTGTTATCATTGATGATGGATGGCAAAGTATTAGTTTGGATGGTGCTAATCCTAATGAAGATGCTAAGAATCTTGTTCTTGGTGGTGAACAAATGACTGGTAGACTTTATAGATTTGATGAATGTGACAAGTTCAAGAAATATGAAAGTGGTTTGTTATTAGGTCCTAATTCACCTCCTTTTAATCCAAAAACTATTAAGGATTTGATTACAAAGGGAATTGAACATGAACATTTAGGTAAGCAAAGAGATAAAGCTATTCTATCTAAAAGTTCTGATTTGGATGAGATTGAGTCAAAGATCAAGAAAGTAATAAAAGAAATTGATGATCTCTTTGGTGGAGAACAAAGTAGTACTAGTAGTGTTCCAAAAATTGAATGTGGAAGCTTGTGTTGCAAGAAAAAGGAGAATGGATTGAAGGCTTTCACAAAAGATTTGAGGACTAAGTTCAAAGGTTTAGATGATGTTTATGTTTGGCATGCACTTTGTGGTGCTTGGGGAGGTGTAAGACCAGGAACTGCACATCTTAATACCAAAATTGTCCCTTGCAAACTTTCTCCTGGTCTTGATGGGACAATGGAGGATCTTGCTGTGGTTAAACTTGTTGAAGGTTCAATTGGACTAGTTGATCCTAATCAAGCCGATGACTTATATGACTCAATGCACTCTTATCTTGCTGAATCTGGTATCACAGGAGTCAAAGTTGATGCCATTCATTGTCTTGAATATGTGTGTGGTGAATATGGAGGCAGAGTTGACCTTGCCAAAGCTTACTATGAAGGGTTGACAAAATCCATTGCCAAGAATTTTAATGGAAATGGAATCATTGCTAGCATGCAACAGTGCAATGACTTTTTCTTCCTTGGAACAAACCAAGTTTCTATGGCAAGAGTTGGGGATGATTTTTGGTTCCAAGATCCTAATGGTGATCCAATGGGAACTTTTTGGTTACAAGGTTTACACATGATTCATTGTTCCTACAATAGCTTATGGATGGGAAATATGATTCAGCCTGATTGGGACATGTTCCTATCAGACCATATTTGTGCTAAATTTCATGCTGGTTCAAGAGCTATTTGTGGTGGTCCAATTTATGTGAGTGATGGTGTTGGTTCTCATGACTTTGATTTGATTAAGAAACTTGTGTTCCCTGATGGTACAATCCCAAAGTGCATATATTTTCCTCTTCCAACTAGAGATTGTCTTTTCAAAAACCCTCTTTTTGACCAAACAACTGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGTGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGATGGGATCCAAAAGAGCACAAGTTTAGGGGCTTCCCTGAATGCTACAAGCCAATAAATGGCACTGTGCATGTAACTGAAGTTGAATGGAATCAGAAGAAAGAAGCATCTCATTTGGGCAAGGCAGAAGAATATGTAGTTTACTTCAATCAAGCTGAAGAACTTTCTTTTATGACTCAAAAATCTGAACCAATTCAATTTACAATTCAACCATCCACATTTGAGTTATATAGTTTTGTTCCAGTCACAAAGCTAGGTGGCAGCATCAAATTTGCACCAATTGGGTTGACTAACATGTTCAATAGTGGTGGAACAATTCTTGATTTGGAATATGTTGAAAGTGGTGCTAAGATTAAGGTTAAAGGTGGTGGGAATTTTCTTGCTTATTCAAGTGAATCACCAAAGAAATTTCAATTGAATGGTTCTGATGTGGATTTTGAGTGGCTGAGTGATGGAAAATTGTTTCTCAATGTTCCTTGGATTGAAGAGGCTTGTGGGGTTTCTGATTTGGCAATTTTCTTCTAG 2595 0.3649 MAPPNEPVNSRTLDLVKTESLYDLSEGKFTVKGVPLLHDVPENVFFSSFSSICKPSESNAPPSLLQKILAFSHKGGFFGFNNKTPSDRLMNSLGSFNGKDFVSIFRFKTWWSTQWVGNSGSDLQMETQWILLEIPEIKSYVVIIPIIEKGFRSALFPGSNDHVMICAESGSLKVKESSFNSIAYVHFDENPYDLMKEAYSVLRVHLNTFRLLEEKTVPNLADKFGWCTWDAFYLTVNPIGVFHGLDDFTKGGIEPRFVIIDDGWQSISLDGANPNEDAKNLVLGGEQMTGRLYRFDECDKFKKYESGLLLGPNSPPFNPKTIKDLITKGIEHEHLGKQRDKAILSKSSDLDEIESKIKKVIKEIDDLFGGEQSSTSSVPKIECGSLCCKKKENGLKAFTKDLRTKFKGLDDVYVWHALCGAWGGVRPGTAHLNTKIVPCKLSPGLDGTMEDLAVVKLVEGSIGLVDPNQADDLYDSMHSYLAESGITGVKVDAIHCLEYVCGEYGGRVDLAKAYYEGLTKSIAKNFNGNGIIASMQQCNDFFFLGTNQVSMARVGDDFWFQDPNGDPMGTFWLQGLHMIHCSYNSLWMGNMIQPDWDMFLSDHICAKFHAGSRAICGGPIYVSDGVGSHDFDLIKKLVFPDGTIPKCIYFPLPTRDCLFKNPLFDQTTVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPINGTVHVTEVEWNQKKEASHLGKAEEYVVYFNQAEELSFMTQKSEPIQFTIQPSTFELYSFVPVTKLGGSIKFAPIGLTNMFNSGGTILDLEYVESGAKIKVKGGGNFLAYSSESPKKFQLNGSDVDFEWLSDGKLFLNVPWIEEACGVSDLAIFF 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04843 864 SUPERFAMILY (Trans)glycosidases 393 637 IPR017853 -
Trre13g04843 864 Pfam Raffinose synthase or seed imbibition protein Sip1 24 847 IPR008811 -
Trre13g04843 864 SUPERFAMILY (Trans)glycosidases 221 271 IPR017853 -
Trre13g04843 864 PANTHER - 23 852 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04843 Trre-Chr13 54985194 54988281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04843 1 864 Glycoside Hydrolase AT4G01970 55.468 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04843 K06611 - gmx:100815922 1427.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04843 13 54985194 54988281 Trre13g04843 13 54985194 54988281 ECH