Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04840 ATGTCGTCGATCGGAGATGCTTTTCTCTTCTTACTATTCTTCGTTACTTATTCCATTTCACTTACTTCTGCTGATTCCATCTATGGCTGCGGTGGATTTGTCCAGGCGAGCTCATCGTTAGTGAAGGCGAGAAAACAAACCGATGCTAAATTGGATTATTCACATGTCACGGTTGAGCTTCAAACAGTGGATGGACTAGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCGGTTTACGACAAGGGTTCCTTTGTAATTAAAGTCAATGGACCTGATGGGTGGTCATGGGATCCCGAAAAGGTTCCTGTGGTAGTAGACAATGATGGTTGCAATGGCAATGAAGATATAAATTTTCGTTTCACAGGGTTCTCTATATCTGGTAAAGTTGTGGGAGCTGCAGGCGGAGAAAGTTGTTCAGTTAAAAATGGAGGTCCTTCAAATGTAAAAGTTGAACTATTTTCTCCTTCTGGGGATCTTGTCTCATCAGTCTTGACTTCATCATCAGGGAGCTACTTGTTTACAAATGTAAATCCAGGAAAATATGAGCTACGAGCTTCAAATCCTGATATGCAAGTTGAAGTTAAAGGTTCAACAGAGGTGGAATTGGGCTTTGGAAATGGGGTGATTGATGATATTTTCTTTGTCCCTGGGTATAGTATCAGTGGGTCTGTTGTTGCACAGGGTAACCCAATATTAGGAGTCCATATTTTCTTATATTCAGAGGACGTCTCTGAGATAGAATGTTTGCAAGGTTCTGCTAATGGTCCACGACAAGAAGCAGCTCTCTGTCATGCGGTATCAGATGCCGATGGAAAGTTCACATTCAATTCAATACCCTGTGGAAGTTATGAACTAGTGCCCTACTATAAGGGTGAAAATACAGTATTTGATGTTTCACCACCTAGTGTCCGTGTTAATGTTAAGCATCAACATGTAAAAGTGCCTCAAAAATTTCAGGTAACTGGATTTTCTGTTGGGGGACGTGTAGTTGATGGAAACAACATGGGAGTGGAGGGTGTTAAGGTCATAGTTGATGGTAATGAAAGATCTATTACTGACAATCAAGGATATTACAAGCTTGATCAGGTTACATCCACACACTATACCATAGAAGCCCGGAAGGAGCATTACAGATTCAAGAAGTTAGAGAATTATATGGTATTGCCAAATATGGCTTCAATTGAAGACATTGTCGCCCATTCATATGATCTTTGTGGTTCAGTTAGGATGGTTAGTAGCGGTCAGAAAGCAACGGTGGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAACAAACAGATGGAAATGGAAATTTCTGCTTTGAGGTTATTCCTGGTGAATATCGCTTGTCAGCTATTGCTTCTACTCCCGATAATGCTGCTGGGCTCATGTTTGCTCCATCTTATATTGATGTTGCAATCAAAAGCCCATTGTTGAATGTTGAATTTTCACAGGCTCTGGTCAATGTCCGCGGTACTGTAGCCTGCAAGGAGAAATGCGATCCATCTGTATCTGTGACTCTTGTGAGACATGTTGGTAAACATAATGAAGAGAGAAAGACAATTAGCTTGACCTCCGAGAGTAGTGAATTTCTGTTTTCAGATGTTATTCCTGGAAAATACAGGCTTGAGGTGAAACATAGTACCCCTGAATCAGTGACCACAAAAGATAATTGGTGCTGGGAGAAGAGCTTCGTAGATGTAAATGTTGGAGCTGAGGACTTGGAAGGAATTGTTTTTGTTCAAAAAGGTTATTGGGTCAATGTTATCTCCACTCATGATGTTGACGGTTCCATAACTCAACCAGACGGGTCAACTGTGAATTTGAAGATTCGGAAAGGTTCCCAGCATATATGTGTTGAATTTCCTGGAATACATGAATTTAGTTTTATTGACTCGTGTATCTTCTTTGGGAGCTCATCTGTGAAAATTGACACATCTAATCTATTGCCCATCCATCTAAAAGGAGAAAAACATCTTATTAGAGGACAAATAAATGTGCATACCGGCTTACTTGATGCATTGCCTGAAAAAATAGTTGTTGATATTTATCGTGATGGAGCTGACATTGCTGATAATGCCGTGGCCATATTCAAGTCCCATGCGAAAGATCAAACAAATACTTCTGTCTTTGAGTATTCTGTTTGGGCCAATCCAGGAGAAAAGCTTACCTTTGCACCTCGGGACTCGAGGAATGATGGAGATAAAAAGCTTTTATTTTATCCTAGAGAACACCAAGTATCAGTGACAGATGACAATTGTCAAGCTTATATTCCTACATTTTCTTGTCGGCTGGGGGTATATATTGAAGGATCAGTCTCGCCTCCTCTTTCTGGTGTTCATATCAGGATTTTTGCTGCTGGAGACAGCAGTGTCACTGGACTTAAAAGTGGTGAACTAATACTTGAAACGACCACTGGAACTGATGGCTCCTTTGTGGCGGGTCCTCTGTATGACGATGTTGGTTATAATGTTCAGGCTTCAAAGCCCGGTTATCATTTAAAACAAATTGGGCCTCATTCCTTTAGTTGTCAGAAGCTTGGTCAGATTTCAGTATATATACATCACAAAGATGATGATAATAAAGAGCTCATTCCTTCAGTTTTGTTATCTTTGAGTGGTGATAATGGCTACAGAAACAACTCGGTATCTGGATCTGGAGGGGCTTTCATATTTGATAATTTGTTTCCTGGAATGTTCTATTTGCGTCCTGTTTTGAAGGAATATGCTTTCTCACCTCCGGCACAGGCAATAGAGCTTGGAGCAGGGGAGTTCAGAGAAGTTATTTTCCAGGCCACGCGAGTAGCTTACAGTGCTATTGGCTTAGTCACTCTGTTATCTGGCCAACCCAAAGGAGGAGTTTCAGTTGAAGCTCGGTCAGTGTCAAAAGGCTATTTTGAGGAAACTGTAACAGATTCTTCTGGATATTATCGTCTTAGAGGACTACTGCCTGATACTGTATATGCTGTCAAAGTAGCTAAAAGGGATGTTATGGGAAGTTCTAATATTGAGCGTGCATCTCCAGATTCTGTTTCTGTTAAGGTTGGAACTGAGGATATCAAGGGTTTGGATTTTATAGTTTTTGAGGAGCCAGAATTGACAATTGTAAGTTGTCATGTCGAAGGAAATGGTACGGATGAACTTCGTAAACATCTTATGGTAGAAATTAGGTCTGCTAGTGAGACAAGCAAGATAGAGTCAGTCTTCCCCCTGCCAATTTCCAACTTCTTCCAAGTTAAAGGCTTATCAAAGGGCAGGCACCTTATACAGCTTCGATCTAGTCTCCCATCAAGCTCACTTAGATTTGAATCTGATATCATTGAGGTTGACTTGGACAAAAGTATTCAAACACATGTGGGCCCACTGAGATACAAGATTGATGATCAGCTGAAGCAGGAGCTGACTCCGGCACCAGTATTCCCCCTTATAATTGCATTTCTAGTTGTTGCACTATTTATCAGCATCCCTAGATTGAATGATTTGTATCAAGCCACAATAGACATACCCGCACCGGGAACCACATCAACTTCTAGAAAAGATGTGAGGAAGCCACTGTTGCGAAAGAAGACTTATTAA 3597 0.4081 MSSIGDAFLFLLFFVTYSISLTSADSIYGCGGFVQASSSLVKARKQTDAKLDYSHVTVELQTVDGLVKDRTQCAPNGYYFIPVYDKGSFVIKVNGPDGWSWDPEKVPVVVDNDGCNGNEDINFRFTGFSISGKVVGAAGGESCSVKNGGPSNVKVELFSPSGDLVSSVLTSSSGSYLFTNVNPGKYELRASNPDMQVEVKGSTEVELGFGNGVIDDIFFVPGYSISGSVVAQGNPILGVHIFLYSEDVSEIECLQGSANGPRQEAALCHAVSDADGKFTFNSIPCGSYELVPYYKGENTVFDVSPPSVRVNVKHQHVKVPQKFQVTGFSVGGRVVDGNNMGVEGVKVIVDGNERSITDNQGYYKLDQVTSTHYTIEARKEHYRFKKLENYMVLPNMASIEDIVAHSYDLCGSVRMVSSGQKATVALTHGPDNVKPQKKQTDGNGNFCFEVIPGEYRLSAIASTPDNAAGLMFAPSYIDVAIKSPLLNVEFSQALVNVRGTVACKEKCDPSVSVTLVRHVGKHNEERKTISLTSESSEFLFSDVIPGKYRLEVKHSTPESVTTKDNWCWEKSFVDVNVGAEDLEGIVFVQKGYWVNVISTHDVDGSITQPDGSTVNLKIRKGSQHICVEFPGIHEFSFIDSCIFFGSSSVKIDTSNLLPIHLKGEKHLIRGQINVHTGLLDALPEKIVVDIYRDGADIADNAVAIFKSHAKDQTNTSVFEYSVWANPGEKLTFAPRDSRNDGDKKLLFYPREHQVSVTDDNCQAYIPTFSCRLGVYIEGSVSPPLSGVHIRIFAAGDSSVTGLKSGELILETTTGTDGSFVAGPLYDDVGYNVQASKPGYHLKQIGPHSFSCQKLGQISVYIHHKDDDNKELIPSVLLSLSGDNGYRNNSVSGSGGAFIFDNLFPGMFYLRPVLKEYAFSPPAQAIELGAGEFREVIFQATRVAYSAIGLVTLLSGQPKGGVSVEARSVSKGYFEETVTDSSGYYRLRGLLPDTVYAVKVAKRDVMGSSNIERASPDSVSVKVGTEDIKGLDFIVFEEPELTIVSCHVEGNGTDELRKHLMVEIRSASETSKIESVFPLPISNFFQVKGLSKGRHLIQLRSSLPSSSLRFESDIIEVDLDKSIQTHVGPLRYKIDDQLKQELTPAPVFPLIIAFLVVALFISIPRLNDLYQATIDIPAPGTTSTSRKDVRKPLLRKKTY 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04840 1198 SUPERFAMILY Carboxypeptidase regulatory domain-like 328 395 IPR008969 -
Trre13g04840 1198 Gene3D Immunoglobulins 138 216 IPR013783 -
Trre13g04840 1198 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 23 1184 - -
Trre13g04840 1198 FunFam Carbohydrate-binding-like fold 144 216 - -
Trre13g04840 1198 Gene3D - 330 404 - -
Trre13g04840 1198 SUPERFAMILY Cna protein B-type domain 865 923 - -
Trre13g04840 1198 SUPERFAMILY Cna protein B-type domain 130 198 - -
Trre13g04840 1198 SUPERFAMILY Starch-binding domain-like 220 298 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04840 Trre-Chr13 54957510 54972645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04840 K26500 - gmx:100794049 2074.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04840 13 54957510 54972645 Trre13g04840 13 54957510 54972645 ECH