Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04835 ATGGAAGATTTAGGATCTACTCGGTTTGATGGTATCAGTAATGCTGTGAGGAGGAAGAGGAGTCAAACTTCGCGCAGGCCGCGACCTGATTCACAGCCTGTTCCTGATCCTGAAGGTCATGAATTGTCTCCTTCATCATCAACACCTCAGTCAGAGGATCCTGACAAGGTTTCTAGTGATGAGAATGATGGTTATGATAATACTGGTTCCAAGAGGAAAGAATTTAATCTCAACCATTGTGTTTCTCAGCAATCGTCCGCTACTGGGCGAAGTGGTTTACAGAATAGACGTAGTAGTGAAGGCGTTCTTGCTCCCGCTAATTGGAAAGGTTCTAGTAGCAAATTCAAGGATAGCTTTGATTCAGAGTCGAAAGATGCAGATATATACGGTGGGAAGAATCCTGAGAGTTCGGGGCAGTTTGGTGTTTCTCAGGATGGATTGGGGAATGAGAGTAGGGTTAAGAAGGTTAAACTCAAGGTTGGTGGTGTGACGCGTACTATACAAGCTAACTCTGCATCTAATAGTGCTTCGGGAAGTGGGTCAACTTCAAAAAGCTCTCGTTTATCGGATGGCTCCAGACCGCGCCAAAAGCAACAGAGTAATTCAGACGAAAATATATCCCCGTCTGAAAAGAAGCGCGGCCTTAAAGGGCTTCCGTGGAAGGATTTCTCAAGGGGTGGTTTTGGTCTTGGGAAGGAGGAGTCATCGATGGGAAAGACATCCGGAAAGAACACATCTAGCAAACAAGGAGACAAGTCTGAACCTGTTCGTAAGAGCAAGAGAGTACCCAAAAGACGTGTACTGGATGGAGAATTTGGTGATGACGATGATGCTGATGATGAGATTCGGTACTTGGAAAAGCTTAAAACATCAAAAGTTTCTGCGGTCTACAGAGATGAAGAAGAATTCAGCAAGAAACATCGAAAACTCTCTAGCGTCTCTAATATGGAAAATGCTGCCTCATCAAGGTCAGGCAAAGATGGTAAGAAAAGGTCTAGGTCTGATAGACTGCTTGAAGATACAGATTATGAGGATGACGAGGAGTCAGGGTCTGATGGAGAGCTTGACGATAAGAAAAAGAAAAAGCAGAGGAAGGAATCCGTTGATGTCTTGATGGACACTAAGAGGGAAATGACTCTTACAACGCGTCAACGGGCCCTTCAATCAGGCAAAGATGCCTCTGCATCTAATTCGAGTTTAATTGAGTTTCCCAATGGATTACCTCCTGCCCCACCTAGAAAGCAAAAAGAGAAACCTACGGAAGAAGAGCTGCTGTCAAAGAAAACTGAGGCTGCCAATAGGCGTAGAATGCAAGTTGAGAAGGCTGCTAGGGAATCTGAGGCTGAAGCTATCAGAAAAATACTTGGTCAAGACTCCAGCAGGAAAAAACGAGAGGATAAAATAAAGAAGCGCCAAGAAGAATTGGCACAGGAAAAGGCAGCCAATGCAGAAAAGCATGCATCAAATACCATCAGATATGTGATGGGTCCTACTGGGACAGTTGTGACTTTTCCCGAGGAAATGGGGATCCCTCCGATTATAAATTCCAAGCCCGTCAGTTATCCTCCACCTCGTGAGAAGTGTGCTGGTCCATCATGTACGAATCCATATAAATACCGGGATTCAAAAACAAAGGTTCCTCTTTGCAGTCTCCAATGCTACAAGGCTGTCCAGGAGAATATTGCAGCTGAACCTACCTGTTGA 1704 0.4484 MEDLGSTRFDGISNAVRRKRSQTSRRPRPDSQPVPDPEGHELSPSSSTPQSEDPDKVSSDENDGYDNTGSKRKEFNLNHCVSQQSSATGRSGLQNRRSSEGVLAPANWKGSSSKFKDSFDSESKDADIYGGKNPESSGQFGVSQDGLGNESRVKKVKLKVGGVTRTIQANSASNSASGSGSTSKSSRLSDGSRPRQKQQSNSDENISPSEKKRGLKGLPWKDFSRGGFGLGKEESSMGKTSGKNTSSKQGDKSEPVRKSKRVPKRRVLDGEFGDDDDADDEIRYLEKLKTSKVSAVYRDEEEFSKKHRKLSSVSNMENAASSRSGKDGKKRSRSDRLLEDTDYEDDEESGSDGELDDKKKKKQRKESVDVLMDTKREMTLTTRQRALQSGKDASASNSSLIEFPNGLPPAPPRKQKEKPTEEELLSKKTEAANRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANAEKHASNTIRYVMGPTGTVVTFPEEMGIPPIINSKPVSYPPPREKCAGPSCTNPYKYRDSKTKVPLCSLQCYKAVQENIAAEPTC 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04835 567 MobiDBLite consensus disorder prediction 514 534 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 295 312 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 323 339 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 74 101 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 353 380 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 381 403 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 250 272 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 54 73 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 414 481 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 164 205 - -
Trre13g04835 567 Coils Coil 461 481 - -
Trre13g04835 567 Pfam HIT zinc finger 524 555 IPR007529 -
Trre13g04835 567 Pfam PAPA-1-like conserved region 423 508 IPR006880 GO:0031011
Trre13g04835 567 PANTHER INO80 COMPLEX SUBUNIT B 10 562 IPR029523 GO:0006338|GO:0031011
Trre13g04835 567 Coils Coil 429 449 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 295 487 - -
Trre13g04835 567 MobiDBLite consensus disorder prediction 115 129 - -
Trre13g04835 567 SMART PAPA_1_2 423 508 IPR006880 GO:0031011
Trre13g04835 567 MobiDBLite consensus disorder prediction 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04835 Trre-Chr13 54916410 54919245 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04835 - - gmx:100814323 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04835 13 54916410 54919245 Trre13g04835 13 54916410 54919245 ECH