LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04813	ATGTCTCGTCGCAATAGCAATGGTCGATCACCACTCGTCAATCCACAGCGTCAAATCACTTCCTTCTTCACCAAAACTCCTTCCTCTTCTCCTTCTCTCACCAAAATCAATCCTAAACCAAACCCTAATCCCATTCCTAACCCTAACCCTAACCCTAGTCCTACCCTTACTACACCTTCACCTCTCAATCCCAAAAAACAACACAAGCCTCGTCTCGTCATTGACGCTTCTCCTACAACAACAATAACACCATCATCATCTTCGCATTCTCATTTCATCGGTAAAAGGATCAAGGTTTATTGGCCTTTAGACGATGCTTGGTATGAAGGTGTTGTCAAATCATTTGATGCTGTTACTAACAAGCATCGGATTCGTTATGATGACGACGAAGAGGAATCAATCGATATTTCCAAGGAGAAGATCGAGTGGCTTCAGGATAATTCATCGAAGAAGCTTAAACGGTTGCGGCGCAGTTCTTCACCTATTAGGAAGATGGTGATTGAGGATAATGAGGTAGAAGGAAGTCCCAAAGAGGAAAAAGAAGAACTCAACGATGATGATGATGATGGTGATAATGATGATTCGGACGATGAAGATTGGGGTAAGAATGCTGTATTGGAGGATGCTGTTGATGAAGAAGAAGATATGGAGCTGGAGGAAGAAAATGAGGTTGTGGAGAACTCTAATGGAAAGAGTAGCGGCAAGGTTGAGCCCAAAAAGCGGAAGCTCGGGGGAGCAGCGAAACCGGAGCCTATGAAAAAGAGCAAGAGTGGAAAGGAAGTTAATGCGGTAGCTGTTAAGCACTCACCATTGGAGGTTAAAAAGATATCCGATGACGTAGACAATGTTGCAACTGGTGATGCTTCTGAAAGATTTGCGCTCCGTGAAGCTCAAAAGTTCCGCTTTATGGGAAAAGATCGCAGGGATGCCAAGCGAAGGCGTCCAGGAGATGAAAATTATGACTCAAGAACTCTCTACTTGCCTCCAGATTTTGTGAGGGGTTTGTCAGATGGCCAGAGACAATGGTGGGACTTCAAGTCAAAACATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAAATGGATGCACACGTAGGAGCAAAAGAGCTTGACTTGCAGTATATGAAGGGAGAGCAACCTCATTGTGGATTTCCAGAGAAAAATTTCTCAATGAATGTAGAGAAACTGGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAACAGACTGAAACACCTGATCAGCTGGAGCTTCGCCGCAAGGAGAACGGATCGAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTTCAAAAGGCACAATAACGGACGGGGAATTTATGTCAACAAATCCTGAAGCTGCATATTTATTGGCACTGACTGAGCACCATGAGAACCATCCAAATGAAATGTCAGAGCGCATCTACGGTGTTTGTGTAGTTGATGTTTCCACAAGCAGAGTCATTCTTGGGCAGTTCAACGATGACTCAGAGTGCAGTGCATTGTGCTCTATCTTGTCTGAGATCAGGCCAGTAGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACAGAAAGGGTACTACTGAAACACACCAGAAACCCTCTAGTGAATGAATTAATTCCAAATGTAGAGTTCTGGGATGCTGATAAAACCTTGGATCAATTGAAGAGAATTTATGGGCACAATAATGATGTTAGTGTTCAAGATGGTGTGTTAGATTGCCTGCCAGATGTTTTACTGGAGCTAGTGAAAACAGGTCATGCCAGCAGAAGTGCACTCTCGGCACTTGGTGGTGCTCTCTATTATTTGAAACAGGCTTTTCTAGATGAGCAGTTGCTTAGATTTGCGCAGTTTGAGTTGCTTCCATGTTCTGTTTTTAGTGGCCTTGCTTCAAAACCATACATGGTTCTTGATGCAGTAGCCCTAGAGAATCTTGAGATTTTTGAAAATAGCAGAAATGGAGACTCTTCTGGCACGCTCTATACTCAATTAAACCAATGTGTTACGGCGTTTGGGAAGAGATTGCTAAAGTCATGGCTTGCAAGACCATTATGTCGTGTGGAGTCAATTAAAGAACGCCAGGAAGCTGTTGCATGTTTGAAGGGAGAAAATCTTCCTCACGCCCTAGAATTTCGAAAAACATTATCGAAGTTACCTGACATGGAGCGGTTGCTTGCACGGGTTTTCTCTTCCAGGGATGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATTCATCAAAGAAACAACTGCAAGAGTTTATTTCAGCCCTGCGCGGTCTTGAACTAATGGCAGAAGCTTGCTCGTCACTCGGTGTCATTTTGAATGATGTCAAATCTAGACAACTTAGTCAACTTTTAACACCTGGTAAAGGTCTTCCTGATGTAAGCACGGATCTGAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCTGGCCGTATAGTACCTCATGAAGGAGTTGACATAGAGTATGATTCAGCTTGTAAGGCAGTTAAAGAGATCGAGTCCAGTTTATTAAAGCATCTCAAGGAACAAAGGAAATTACTTGGATGCGCATCAATCTCTTATGTTCATATTGGAAAGGACACATACCTATTGGAAGTGCCTGAAAATTTGTCTGAGAATATTCCTCGGGATTATGAGAGGCGTTCATCCAAGAAAGGTGTCTGTAGGTATTGGACTCCAGATATTAAAATATTTTTGAAAGAGCTCTCCCATGCTGAATCTGAAAAGGAGACCTTATTGAAAAGTACGTTGCAGAGAATGATTGGGCGTTTTTGTGAGCATCACACTCAGTGGAAGCAGTTAGTGTCTGCAACTGCTGAGTTGGATGTTTTGATCAATTTAGCTATTGCTAGTGATTACTATGAAGGAACAACATGCAGACCAAGTTTTTCTGGGACATTATGTACAAATGAAGCTCCATACATCTATGCTAAAAGTCTAGGACACCCAGTTCTTAGGAGTGATTCCTTGGGAAAGGCCGCCTTTGTACCTAATGACATAACCATAGGTGGTCCAGATCAGGCCTCTTTTATTCTTCTTACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCTCAGGTAGGGGCTGATGTTCCTGCGGAAAGTTTTGAATTGTCTCCTGTGGACCGAATTTTTGTTCGGATGGGTGCCAGAGATAATATCATGGCTGGCCAAAGTACATTTTTAACCGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCAACTTGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGTGGAACCTCAACGTCGGACGGACAAGCCATTGCGGAATCAGTATTAGAACATCTTGTACGTAAGGTGCAGTGTCGTGGATTGTTTTCTACACACTATCATCGATTAGCTATAGATTATATCAAAGATCCCAAGGTGTCTCTCTCTCACATGGCATGCCAAGTTGGTAGTGGAAGTGAAGGTTTGGACGAAGTCACCTTTCTTTACAGGCTGACTGCTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGATTAGCTGGACTGCCGACTTCTGTGCTTCAGAAGGCTGCTGCTAAGTCTAGAGAATTTGAGGCCACTTATGGTAAATACAGAAAGGCGTTATCTGAAACAAACTCTCTGAATCAAAGTTGGGTCGATGAGATAACAACTATTGTACAAAAATTGAACAATGCTGCTACAAATTTGAGTTGGGAGGAGACTGTTTCTGATGGTTCCCTAATGGAGCTTCAATGTAAAGCACGAAAACTTCTACAACAATGTTAA	3849	0.4276	MSRRNSNGRSPLVNPQRQITSFFTKTPSSSPSLTKINPKPNPNPIPNPNPNPSPTLTTPSPLNPKKQHKPRLVIDASPTTTITPSSSSHSHFIGKRIKVYWPLDDAWYEGVVKSFDAVTNKHRIRYDDDEEESIDISKEKIEWLQDNSSKKLKRLRRSSSPIRKMVIEDNEVEGSPKEEKEELNDDDDDGDNDDSDDEDWGKNAVLEDAVDEEEDMELEEENEVVENSNGKSSGKVEPKKRKLGGAAKPEPMKKSKSGKEVNAVAVKHSPLEVKKISDDVDNVATGDASERFALREAQKFRFMGKDRRDAKRRRPGDENYDSRTLYLPPDFVRGLSDGQRQWWDFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPDQLELRRKENGSKDKVVRREICAVVSKGTITDGEFMSTNPEAAYLLALTEHHENHPNEMSERIYGVCVVDVSTSRVILGQFNDDSECSALCSILSEIRPVEIVKPAKLLSAETERVLLKHTRNPLVNELIPNVEFWDADKTLDQLKRIYGHNNDVSVQDGVLDCLPDVLLELVKTGHASRSALSALGGALYYLKQAFLDEQLLRFAQFELLPCSVFSGLASKPYMVLDAVALENLEIFENSRNGDSSGTLYTQLNQCVTAFGKRLLKSWLARPLCRVESIKERQEAVACLKGENLPHALEFRKTLSKLPDMERLLARVFSSRDASGRNANKVVLYEDSSKKQLQEFISALRGLELMAEACSSLGVILNDVKSRQLSQLLTPGKGLPDVSTDLNHFKDAFDWVEANNSGRIVPHEGVDIEYDSACKAVKEIESSLLKHLKEQRKLLGCASISYVHIGKDTYLLEVPENLSENIPRDYERRSSKKGVCRYWTPDIKIFLKELSHAESEKETLLKSTLQRMIGRFCEHHTQWKQLVSATAELDVLINLAIASDYYEGTTCRPSFSGTLCTNEAPYIYAKSLGHPVLRSDSLGKAAFVPNDITIGGPDQASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATCNSLVALDELGRGTSTSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAIDYIKDPKVSLSHMACQVGSGSEGLDEVTFLYRLTAGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEATYGKYRKALSETNSLNQSWVDEITTIVQKLNNAATNLSWEETVSDGSLMELQCKARKLLQQC	1282

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	208	223	-	-
Trre13g04813	1282	SUPERFAMILY	DNA repair protein MutS, domain III	646	970	IPR036187	-
Trre13g04813	1282	Pfam	MutS family domain IV	833	924	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	233	261	-	-
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	161	179	-	-
Trre13g04813	1282	Gene3D	-	809	940	-	-
Trre13g04813	1282	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	987	1219	IPR027417	-
Trre13g04813	1282	Pfam	MutS domain V	1028	1218	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	FunFam	DNA mismatch repair protein	809	940	-	-
Trre13g04813	1282	SMART	DNAend	663	1004	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	Gene3D	MutS, connector domain	460	640	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	SUPERFAMILY	Tudor/PWWP/MBT	91	134	-	-
Trre13g04813	1282	Gene3D	-	643	964	-	-
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	180	201	-	-
Trre13g04813	1282	Coils	Coil	202	223	-	-
Trre13g04813	1282	Gene3D	-	84	142	-	-
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	74	89	-	-
Trre13g04813	1282	FunFam	DNA mismatch repair protein	293	456	-	-
Trre13g04813	1282	CDD	Tudor_Agenet_AtEML-like	93	143	-	-
Trre13g04813	1282	FunFam	DNA mismatch repair protein	975	1250	-	-
Trre13g04813	1282	Gene3D	DNA repair protein MutS, domain I	294	455	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	Pfam	MutS domain II	477	615	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	SUPERFAMILY	DNA repair protein MutS, domain II	456	658	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	SMART	mutATP5	1024	1216	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	Pfam	MutS domain III	649	964	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	SUPERFAMILY	DNA repair protein MutS, domain I	324	447	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	1	36	-	-
Trre13g04813	1282	PIRSF	Msh6	2	1265	IPR017261	GO:0006298\|GO:0030983
Trre13g04813	1282	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	339	1231	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	147	262	-	-
Trre13g04813	1282	Gene3D	-	975	1255	IPR027417	-
Trre13g04813	1282	Pfam	MutS domain I	339	451	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	1	89	-	-
Trre13g04813	1282	MobiDBLite	consensus disorder prediction	37	59	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04813	Trre-Chr13	54779137	54787125	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04813	K08737		-	gmx:100811104	1895.55

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g04813	13	54779137	54787125	Trre13g04813	13	54779137	54787125	ECH