Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04799 ATGTCTTCCACATTCTCACTCTCACCTCTCATTACCCTCTTCTTCATCCTCCTCCTCCACCGCACTTGCGACGCACGTGACACATTCGCGTGTGACGCAAAAGATATCACAACAAAGAACTTACCATTTTGCAATGTCAAACTGGCTATTCAAGAGAGAGTGAAGGATCTAATAGGAAGATTAACTTTGCAAGAGAAAGTGAATTTGCTAGTGAATAATGCTGCGGCGGTTCCGAGAGTCGGAATAAAGGGTTATGAGTGGTGGTCGGAGGCACTTCATGGTGTTTCAAATGTGGGTCCTGGAACTAGATTTGGTGGTGTTTTTCCTGGTGCTACTAGTTTTCCTCAAGTTATCACCACCGCTGCTTCTTTTAATGCTTCTTTGTGGGAGGCTATTGGACGGGTTGTCTCGGATGAAGCAAGGGCAATGTACAATGGAGGAGTAGCTGGGTTAACTTATTGGAGTCCAAATGTGAATATTTTTCGAGACCCTAGGTGGGGTCGTGGACAGGAAACTCCCGGTGAAGATCCTCTATTAGCCGGTAGTTATGCTGCTAGTTATGTTAAAGGTTTACAGGGATCAGACGGTAACCGGTTGAAAGTTGCTGCTTGTTGTAAACACTTCACAGCTTATGATATTGATAATTGGAATGGTGTTGATCGCTTTCACTTTAATGCACTGGTGAGTAAACAAGACATAGAGGACACATTCGATGTGCCATTTAGAATGTGTGTGAAGGAAGGAAAAGTAGCTAGTGTCATGTGTTCTTACAATCAAGTTAATGGGGTCCCTACTTGTGCTGACCCAAACCTCCTAAAGAAAACAGTTCGTGGACAATGGGGTCTTGATGGGTACATTGTATCTGACTGTGACTCTGTTGGAGTGTTTTACAATAGCCAACATTATACATCAACGCCAGAAGAAGCTGCTGCTGATGCCATCAAAGCAGGTTTGGATTTAGATTGTGGGCCATTCCTAGGCTTGCACACACAGGATGCTGTGAAAAAAGGTTTGTTAAAAGAAACAGATGTGAATGGTGCTTTGGTGAATACACTTACTGTGCAAATGAGATTAGGGATGTTTGATGGAGAGCCATCAGCTCAAGCTTATGGCAGATTAGGCCCAAAAGATGTATGTAAACCAGCTCACCAAGAGCTTGCACTTGATGCCGCTAGACAAGGGATTGTGCTCCTCAAAAACACTGGCCCTACTTTGCCTCTCTCCCAACAACGACACCGAACCGTGGCTGTCATTGGGCCCAATTCTAATGTCACTGTTACCATGATCGGAAACTATGCCGGTATTGCATGTGGATATACTAGCCCCTTACAAGGAATAGGAAGATATGCTAGGACAATTCATCAATTGGGTTGTACAAATGTAGCTTGTAGAGATGATGAACAATTTGGGCCTGCCTTAGATGCAGCTCGTCATGCAGATGCAACTGTTCTTGTGATAGGCTTAGATCAGTCTATTGAAGCTGAATTTGTTGATAGGACTAACTTGCTTTTGCCCGGACATCAACAAGATCTTGTTTCAAAGGTGGCAGCTGCATCAAAGGGACCAACTATTTTGGTCTTGATGTCTGGTGGGCCTGTCGACATTACTTTCGCCAAGAATGATCCCCGAATTGCTAGTATTTTGTGGGCCGGTTATCCGGGCCAAGCTGGTGGTGCCGCCATTGCTGATATTTTATTTGGAACCGCTAATCCAGGAGGCAAGCTACCTGTGACATGGTACCCACAAGAGTACCTAAAAAATTTGGCCATGACAAATATGGCAATGAGACCAAGCACAGTAGGGTACCCAGGAAGAACATATAGATTCTACAAGGGACCAGTTGTATATCCATTTGGACATGGATTAACATTCACACATTTTGTTCACACATTAGCAAGTGCACCCACATTAGTCTCAGTTCCGGTGCACGGTCACCGACACGGCAATAACACAAACATTTCAAACAAAGCAATTAGAGTGACACATGCAAGATGTGGCAAACTATCTATAACCCTTCATGTTGATGTTAAAAATGTTGGTTCTAGAGATGGTACTCACACATTGTTAGTTTTCTCTGCACCACCTAATGGTGGTGCCCATTGGGTACCACAAAAACAACTTGTGACTTTTGAAAAAGTTCATGTTCCTGCCAAAACTAAACAAAGGGTGAAAGTTAATATTCATGTTTGCAAATTGCTTAGTGTTGTTGATAGGTCTGGGATTAGGAGAATTCCAATGGGGGTACATAGTCTTCATATTGGTGATGTTAAACATTCTGTTTCACTTCAAGCAGAAACACTTGGGATTATCAAGTCTTGA 2319 0.4329 MSSTFSLSPLITLFFILLLHRTCDARDTFACDAKDITTKNLPFCNVKLAIQERVKDLIGRLTLQEKVNLLVNNAAAVPRVGIKGYEWWSEALHGVSNVGPGTRFGGVFPGATSFPQVITTAASFNASLWEAIGRVVSDEARAMYNGGVAGLTYWSPNVNIFRDPRWGRGQETPGEDPLLAGSYAASYVKGLQGSDGNRLKVAACCKHFTAYDIDNWNGVDRFHFNALVSKQDIEDTFDVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGQWGLDGYIVSDCDSVGVFYNSQHYTSTPEEAAADAIKAGLDLDCGPFLGLHTQDAVKKGLLKETDVNGALVNTLTVQMRLGMFDGEPSAQAYGRLGPKDVCKPAHQELALDAARQGIVLLKNTGPTLPLSQQRHRTVAVIGPNSNVTVTMIGNYAGIACGYTSPLQGIGRYARTIHQLGCTNVACRDDEQFGPALDAARHADATVLVIGLDQSIEAEFVDRTNLLLPGHQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNDPRIASILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPQEYLKNLAMTNMAMRPSTVGYPGRTYRFYKGPVVYPFGHGLTFTHFVHTLASAPTLVSVPVHGHRHGNNTNISNKAIRVTHARCGKLSITLHVDVKNVGSRDGTHTLLVFSAPPNGGAHWVPQKQLVTFEKVHVPAKTKQRVKVNIHVCKLLSVVDRSGIRRIPMGVHSLHIGDVKHSVSLQAETLGIIKS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04799 772 FunFam probable beta-D-xylosidase 2 380 625 - -
Trre13g04799 772 Pfam Glycosyl hydrolase family 3 C-terminal domain 395 623 IPR002772 GO:0004553|GO:0005975
Trre13g04799 772 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 395 627 IPR036881 GO:0004553|GO:0005975
Trre13g04799 772 Gene3D - 381 625 IPR036881 GO:0004553|GO:0005975
Trre13g04799 772 Gene3D - 53 370 IPR036962 GO:0004553|GO:0005975
Trre13g04799 772 FunFam Probable beta-D-xylosidase 2 649 769 - -
Trre13g04799 772 Pfam Glycosyl hydrolase family 3 N terminal domain 107 347 IPR001764 GO:0004553|GO:0005975
Trre13g04799 772 PRINTS Glycosyl hydrolase family 3 signature 114 133 IPR001764 GO:0004553|GO:0005975
Trre13g04799 772 PRINTS Glycosyl hydrolase family 3 signature 201 217 IPR001764 GO:0004553|GO:0005975
Trre13g04799 772 PRINTS Glycosyl hydrolase family 3 signature 275 293 IPR001764 GO:0004553|GO:0005975
Trre13g04799 772 SMART Fn3_like_2 686 757 IPR026891 -
Trre13g04799 772 SUPERFAMILY (Trans)glycosidases 41 394 IPR017853 -
Trre13g04799 772 Pfam Fibronectin type III-like domain 687 755 IPR026891 -
Trre13g04799 772 PANTHER SUGAR HYDROLASE-RELATED 26 760 IPR044993 GO:0009044|GO:0045493
Trre13g04799 772 FunFam probable beta-D-xylosidase 7 53 367 - -
Trre13g04799 772 Gene3D Immunoglobulins 648 769 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04799 Trre-Chr13 54650206 54657194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04799 11 772 Glycoside Hydrolase AT1G02640 74.476 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04799 - - gmx:100789316 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04799 13 54650206 54657194 Trre13g04799 13 54650206 54657194 ECH