Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04787 ATGTTGTGGATTATGAAATTTTCACAGGTTTTCTCCGCCGCAATGTTGGTAATAATTCTCTCCCCCTCTCTCCAATCTTCATACTACCCTGCCGAAGCAATTCGATCTTCTTATTCATATCTTCAAATCCCTAACGATTACCGATTTTCGTTTCGGAAATCTCCTTCATTCCACAATGCAGATGAATGTGATTCGATTTCAACAGAAATCAGTGTTTGTGATCCTACTTTGGTTCATGTTGCTATAACCCTAGATATTGATTATCTTCGTGGTTCAATCGCAGCCGTTCATTCTATTCTACGCCATGCGTTTTGTCCTCAGAGTATTTTCTTTCATTTTCTTGTTACTGATACGAATCTTGAAGCTTTGGTTCAATCCACTTTTCCTGAGTTGAAATTCAAGGTTTATTACTTCGATCCTAATATTGTTAAGAATTTGATTTCAACTTCTGTTAGACAAGCGTTAGAACAACCGTTGAATTATGCAAGAAATTATCTCGCCGATCTATTAGAGACTTGTGTTCAGAGAGTGATTTACTTGGATTCAGATCTCGTTGTTGTTGATGATGTTGCCAAACTATGGACTACAGATTTAGGTTTCAAAACAATCGGAGCACCGGAATATTGTCACGCCAACTTCACTAAGTATTTCACGGCGAGGTTTTGGTCGGAGCCGTCGTTTGCGGCGACATTCGAGAAACGGAAGGCTTGTTACTTTAACACGGGAGTTATGGTTATGGATCTGGTACGGTGGAGGAAAGAAGGGTACACGAAGAAGATAGAAAAATGGATGGAGATACAGAAGAGTGAAAGGATCTATGAACTTGGTTCATTACCACCGTATCTTTTGGTATTTGCAGGACACGTGGCAGGGATTGAACACCGGTGGAATCAACATGGTTTAGGTGGTGATAATGTGAAAGGTAGTTGTAGAGATTTGCATGCTGGTCCGGTGAGTTTGTTACATTGGTCAGGTAGTGGGAAGCCATGGTTAAGACTTGATTCAAGAAATCCTTGTCCTCTTGATGCACTTTGGTCACCGTTTGATTTGTATGGACATGGACACAGTTATGAATCATTATAG 1083 0.4026 MLWIMKFSQVFSAAMLVIILSPSLQSSYYPAEAIRSSYSYLQIPNDYRFSFRKSPSFHNADECDSISTEISVCDPTLVHVAITLDIDYLRGSIAAVHSILRHAFCPQSIFFHFLVTDTNLEALVQSTFPELKFKVYYFDPNIVKNLISTSVRQALEQPLNYARNYLADLLETCVQRVIYLDSDLVVVDDVAKLWTTDLGFKTIGAPEYCHANFTKYFTARFWSEPSFAATFEKRKACYFNTGVMVMDLVRWRKEGYTKKIEKWMEIQKSERIYELGSLPPYLLVFAGHVAGIEHRWNQHGLGGDNVKGSCRDLHAGPVSLLHWSGSGKPWLRLDSRNPCPLDALWSPFDLYGHGHSYESL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04787 360 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 17 353 - -
Trre13g04787 360 Pfam Glycosyl transferase family 8 79 332 IPR002495 GO:0016757
Trre13g04787 360 SUPERFAMILY Nucleotide-diphospho-sugar transferases 78 353 IPR029044 -
Trre13g04787 360 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 338 IPR029044 -
Trre13g04787 360 FunFam Hexosyltransferase 79 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04787 Trre-Chr13 54554040 54555122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04787 1 353 Glycosyltransferase AT3G62660 75.209 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04787 - - cit:102622159 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04787 13 54554040 54555122 Trre13g04787 13 54554040 54555122 ECH