Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04772 ATGGCATCTGCACCTTCCATGTCAGTTTCTTTGGAGTGTGTGAACGTATGTAATTTGTGGAGAGGAGATGGAAATGGAAGATATGCTTGTAATTTTCTATCCTGTGCTTCCAAAGCTCCTAGGGTTCTTACTGGATTTCTTGCCACCACGGCTCATCCTCATTACTTGTTCAATGCTCCAAATGGAAGAAGGAACCGGTATAATTTTGCATGTGAAGCTTTTAGTATAGTAGGTTCATATTCCGATGATGAAGCACTTGGCATCACACTTCGCGATGGATTCTCTAGATCTGTCTTTTCTAGATTTGCTCCTAGGCGTTGGCAATTGTCTTGTTCTTCGGCTTTTTCCTCTGATATTGCCAGCGAGTTTTCTCCTGGAAGTTTGTGGGAGGATCTTAAGCCCGTGATCTCGTATCTTCCTCCGAAAGAACTGGAGTTAGTTCATAATGCTTTTATGTTGGCATTTAAAGCTCATGATGGTCAGAAAAGACGCAGCGGTGAACCCTTTATCATTCATCCGGTTGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCTGGATTGCTCCATGACACGGTTGAAGATACAGATGTTGTTACTTTTGAAAGGATAGAGGAGGAATTTGGTGCGACTGTGCGCCACATTGTGGAAGGAGAGACTAAGGTGTCAAAGCTGGGAAAGTTGAAGTACAAGAATCAAAATGATTCTGTTCAAGATGTGAAAGCAGAGGACCTTCGACAAATGTTTCTAGCTATGACAGAGGAGGTTCGTGTTATTATCGTCAAATTAGCAGACAGGTTACATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGACTAGCATTGCGGTGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCGGAACTAGAAAATCTATCATTTATGTACACAAATCCTGAAGATTATGCGAAGGTGAAGAGAAGAGTTGCCGACCTGTTCAAAGAACATGAGAAAGATCTTTTAGAGGCAAACAAAATATTGTTAAAGAAAATCCAAGATGATCAATTCTTAGACCTTTTGGCAGTTAAAACGGAAGTTCGTGCCGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTGCTCAAGTCTAAAAGTTTGATCAATGAAATTAACCAAATTGCACAGCTTCGTGTCATTGTTAAACCAAAGCCGTGCATTGGGGTTGGGCCTTTATGCAGTCCACAGCTGATTTGCTATCATGTTCTGGGGTTGATCCATGGAGTCTGGACCCCTATTCCTAGATCTGTGAAGGATTACATTGCAACCCCTAAACCTAATGGGTACAAGAGTCTTCATAGCACTGTGATTCCGTTTTTGTATGAGAGTATGTTCAGGCTTGAAATCCAGATTAGAACAGAAGAAATGGATTTGATAGCGGAGAGGGGCATTGCAGCTCATTATAGTGGGAAAGAATTTGTTACTGACTTGGTTGGAAGTGCAGTGCCCAGTGGTAAAAGCTCAAGGGGGAAGGCAGTGTGTCTTAGCAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCTATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTGTTACAAGAGATCTTTTGGGCAGTCGTGTCTTTGTATTTACACCCAGGGGAGAGATTAAGAATCTTCCGCAAGGTGCTACAGTAATCGACTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCTGCAAAGGTCAACGGCAATCTTGTTTCTCCTGCGCGAGTGCTTGCAAATGCAGAAGTTGTGGAGATAATAACATATAATGCACTTTCCAGCAAATCAGCTTTTCAAAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGAAGTGCAAGACACAAAATAATGAAGTTTCTGAAGGAGCAAGCTGCACTTTCCGCAGCTGATATCACTACAGAAGCAGTTAATGACTTTGTCAATGATTCTGATGGTGATAGTGACTCTGAAAAGCAGTCAAATGGTTCCAGTGGTTCCAAACATAAGATGGGGAGAATACTATTGAATGGTGTGGAAATATCAACTTCAGAAAGAAGCGAGACTGTCCTCCAGAGTAAGAATGGAAGTGCTTGGACTCCCAAGGTCAATGGAAAACACAATAAGCATGTGCATCATGTAAATTTAAACGGCAAAGGGGACATGATGCTGCAGGGAAACCATGTTGCCAATATGATTCAAGTTAACAATCCAAAATATAAAGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCTCATAAAATTGCCTCGTGGCACAATATAGAAGGGCATTCCATCCAATGGTTATCTGTAGTATGCATAGACCGAAGAGGCATGATGGGTGAGGTCACTACAGCATTGGCCACTGCAGACATAACCATATCTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGTTATTTCAAATAGAAGGAAATTTAGAAAACTTGGTGAATGCTTGCTCTAGAGTAGATCAAATACTGGGTGTTTTGGGATGGTCTACTGGCTGCAGCTGGCCAAGCTTGATGGAAAACCATGGCGTTCTTGAATGTTAG 2649 0.4209 MASAPSMSVSLECVNVCNLWRGDGNGRYACNFLSCASKAPRVLTGFLATTAHPHYLFNAPNGRRNRYNFACEAFSIVGSYSDDEALGITLRDGFSRSVFSRFAPRRWQLSCSSAFSSDIASEFSPGSLWEDLKPVISYLPPKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTDVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNQNDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAVETLQVFAPLAKLLGMYQIKSELENLSFMYTNPEDYAKVKRRVADLFKEHEKDLLEANKILLKKIQDDQFLDLLAVKTEVRAVCKEPYSVYKAVLKSKSLINEINQIAQLRVIVKPKPCIGVGPLCSPQLICYHVLGLIHGVWTPIPRSVKDYIATPKPNGYKSLHSTVIPFLYESMFRLEIQIRTEEMDLIAERGIAAHYSGKEFVTDLVGSAVPSGKSSRGKAVCLSNANIALRIGWLNAIREWQEEFVGNMSSREFVDTVTRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLKEQAALSAADITTEAVNDFVNDSDGDSDSEKQSNGSSGSKHKMGRILLNGVEISTSERSETVLQSKNGSAWTPKVNGKHNKHVHHVNLNGKGDMMLQGNHVANMIQVNNPKYKEVLPGLESWQAHKIASWHNIEGHSIQWLSVVCIDRRGMMGEVTTALATADITISSCVAEIDGGRGMAVMLFQIEGNLENLVNACSRVDQILGVLGWSTGCSWPSLMENHGVLEC 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04772 882 Gene3D - 556 631 IPR012675 -
Trre13g04772 882 SUPERFAMILY Nucleotidyltransferase 324 500 IPR043519 -
Trre13g04772 882 Pfam TGS domain 563 622 IPR004095 -
Trre13g04772 882 SUPERFAMILY TGS-like 550 622 IPR012676 -
Trre13g04772 882 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 877 - -
Trre13g04772 882 CDD HDc 167 298 IPR003607 -
Trre13g04772 882 MobiDBLite consensus disorder prediction 675 697 - -
Trre13g04772 882 SMART hd_13 165 285 IPR003607 -
Trre13g04772 882 SMART RelA_SpoT_2 376 498 IPR007685 GO:0015969
Trre13g04772 882 CDD TGS_RSH 564 622 IPR033655 -
Trre13g04772 882 FunFam GTP pyrophosphokinase (RelA/SpoT) 555 629 - -
Trre13g04772 882 FunFam GTP pyrophosphokinase RelA 128 323 - -
Trre13g04772 882 Pfam Region found in RelA / SpoT proteins 376 493 IPR007685 GO:0015969
Trre13g04772 882 ProSiteProfiles TGS domain profile. 559 622 IPR004095 -
Trre13g04772 882 Gene3D Hypothetical protein af1432 129 322 - -
Trre13g04772 882 Pfam HD domain 150 307 - -
Trre13g04772 882 SUPERFAMILY HD-domain/PDEase-like 133 322 - -
Trre13g04772 882 Gene3D Beta Polymerase, domain 2 324 478 IPR043519 -
Trre13g04772 882 ProSiteProfiles HD domain profile. 169 276 IPR006674 -
Trre13g04772 882 SUPERFAMILY ACT-like 794 862 IPR045865 -
Trre13g04772 882 CDD NT_Rel-Spo_like 366 486 IPR007685 GO:0015969
Trre13g04772 882 Gene3D - 795 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04772 Trre-Chr13 54439198 54446857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04772 179 500 EF-hand Containing Proteins AT3G17470 30.909 6.47e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04772 K00951 - gmx:100786637 1492.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04772 13 54439198 54446857 Trre13g04772 13 54439198 54446857 ECH