Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04769 ATGTCTACGCAACCTAAGTTTACCAGAGTTCCCAGTATCAGAGACAGAGTTCAAGATACTCTCTCTGCTCACCGTAACGAACTCATTTCTCTCCTCTCCAGGTATGTGGCTCAGGGGAAAGGGATTTTGCAACCTCATAAGTTGATTGATGAGCTTGAAAGCATACCTGGTGAGGATCATGCTACACTTGATCTTAAAAATGGTCCCTTTGCTGAAATTATCAAGTCTGCACAGGAAGCTATAGTTTTGCCTCCTTTTGTGGCAATAGCAGTTCGTCCAAGACCCGGTGTTTGGGAATATGTCCGTGTTAATGTCTTTGATCTCAGCGTGGAGCAGTTGAGCGTTTCTGAATATCTCGGCTTCAAAGAAGAACTTGTAGATGGAAAGAGTAATGATATTTTCTTACTGGAGCTTGATTTTGAGCCATTTAATGCATCATTTCCTCGTCCAACTCGCTCATCTTCCATTGGCAATGGTGTGCAATTTCTCAACCGCCACCTCTCATCAAATATGTTTCGTAACAAAGATTGCTTGGAACCCTTGCTTGATTTCCTCCGTGTTCACACATATAAAGGCCATGCACTGATGTTAAATGATAGAATACCAAACATTTCCAAACTTCAGTCTGCTTTGGCCAAGGCTGAGGATAATCTTTCTAAGCTTGCGCCTGATACACTCTACTCTGAGTTTGAATATGTATTACAAGGATTGGGGTTTGAGAGAGGTTGGGGTGATACTGCTGGCCGGGTATTAGAGATGATGTATCTGCTATCAGATATTCTTCAGGCCCCTGATCCTTCTACACTAGAGACTTTTCTTGGGAGAGTACCAATGGTGTTCAATGTTGTTATATTGTCTCCACATGGCTTCTTTGGGCAAGCCAATGTCTTAGGTTTGCCTGATACCGGTGGGCAGGTTGTCTATATACTAGATCAAGTGCGAGCCCTTGAGAATGAGATGCTGCTTCGGATCAAGAAACAAGGGCTTGATTTCACTCCTAGAATTCTAATTGTAACCAGGTTAATACCTGATGCAAAAGGGACAACATGCAACCAGCGACTAGAAAGAGTCAGTGGTACTGATTACACACATATTTTGCGTGTTCCATTCAGATCAGAAAAAGGAATTCTTCGTAAATGGATCTCAAGGTTTGATGTCTGGCCTTTCTTGGAAACTTATGCAGAGGATGTTGCTAGTGAAATTATTGCCGAGTTACAAGGTTATCCTGATTTCATCATAGGAAACTACAGTGATGGGAATCTCGTTGCATCTTTATTGTCTTACAAAATGGGAGTTACCCAGTGCACAATTGCGCATGCACTGGAGAAGACAAAATATCCAGATTCAGATATATATTGGAAGAAATTTGAGGATAAATACCATTTTTCATGTCAGTTCACTGCTGACCTAATAGCCATGAACAATGCTGATTTTATTATCACCAGTACATACCAAGAGATTGCAGGAACGAAGAATACTATTGGCCAGTATGAGAGTCACACTGCTTTTACTCTTCCTGGACTCTATAGGGTTGTCCATGGCATTGATGTTTTTGATCCCAAGTTCAATATTGTCTCTCCTGGAGCAGATATGACAATATATTTCCCCTACTCTGAGAAGGAGAAACGACTCACATCCCTGCACGGTTCAATTGAAAAGCTATTATATGATAACGAGCACAGTGATGAGTACACCGGTTCACTGGCGGACCGGACAAAGCCTATAATTTTCTCCATGGCAAGGCTAGACAGAGTTAAAAATATAACTGGTTTGGTAGAAAGCTATGCTAAGAACAGCAAATTGAGGGAACTGGTCAACCTTGTCGTAGTAGCTGGTTATATTGATGTGAAGAAATCAAGTGACAGAGAAGAAATTGAAGAGATTGAAAAGATGCATGATCTCATGAAGCAGTATGATTTGAATGGCGAGTTTCGATGGATTACTGCCCAAACAAATAGAGCACGTAACGGGGAGCTTTATCGCTACATAGCTGATACAAAAGGTGCATTCATTCAGCCTGCTTTCTATGAAGCTTTTGGACTTACAGTTGTGGAGGCCATGACTTGTGGGCTCCCTACATTTGCTACTTGCCACGGTGGTCCTGCTGAAATCATCGAACATGGTGTATCAGGATTCCATATTGATCCTTATCATCCCGATCAAGCTTCAGAGTTATTGGTTAAATTTTTCCAACAATGTAAGGAGGACCCGAACCATTGGAATAAAATATCAGATGGTGGTTTACAAAGAATATATGAAAGGTACACATGGAAGATCTATTCTGAAAGGCTTATGACCTTGGCGGGAGTTTATAGTTTCTGGAAATATGTTTCGAAACTAGAGAGACGTGAAACTCGACGATATCTTGAGATGTTCTACATTCTCAAGTTCCGTGATTTGGCAAATTCTGTTCCATTAGCAAAGGATGATGCAAATTAA 2439 0.4121 MSTQPKFTRVPSIRDRVQDTLSAHRNELISLLSRYVAQGKGILQPHKLIDELESIPGEDHATLDLKNGPFAEIIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVFDLSVEQLSVSEYLGFKEELVDGKSNDIFLLELDFEPFNASFPRPTRSSSIGNGVQFLNRHLSSNMFRNKDCLEPLLDFLRVHTYKGHALMLNDRIPNISKLQSALAKAEDNLSKLAPDTLYSEFEYVLQGLGFERGWGDTAGRVLEMMYLLSDILQAPDPSTLETFLGRVPMVFNVVILSPHGFFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKKQGLDFTPRILIVTRLIPDAKGTTCNQRLERVSGTDYTHILRVPFRSEKGILRKWISRFDVWPFLETYAEDVASEIIAELQGYPDFIIGNYSDGNLVASLLSYKMGVTQCTIAHALEKTKYPDSDIYWKKFEDKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTIGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMTIYFPYSEKEKRLTSLHGSIEKLLYDNEHSDEYTGSLADRTKPIIFSMARLDRVKNITGLVESYAKNSKLRELVNLVVVAGYIDVKKSSDREEIEEIEKMHDLMKQYDLNGEFRWITAQTNRARNGELYRYIADTKGAFIQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQASELLVKFFQQCKEDPNHWNKISDGGLQRIYERYTWKIYSERLMTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLANSVPLAKDDAN 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04769 812 Gene3D Glycogen Phosphorylase B; 530 757 - -
Trre13g04769 812 Pfam Glycosyl transferases group 1 569 742 IPR001296 GO:0016757
Trre13g04769 812 NCBIfam sucrose synthase 25 806 IPR012820 GO:0005985|GO:0016157
Trre13g04769 812 FunFam Sucrose synthase 149 278 - -
Trre13g04769 812 Gene3D Glycogen Phosphorylase B; 283 800 - -
Trre13g04769 812 Gene3D - 12 148 - -
Trre13g04769 812 Pfam Sucrose synthase 9 556 IPR000368 GO:0005985|GO:0016157
Trre13g04769 812 PANTHER - 7 809 IPR012820 GO:0005985|GO:0016157
Trre13g04769 812 FunFam Sucrose synthase 283 565 - -
Trre13g04769 812 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 298 766 - -
Trre13g04769 812 Gene3D - 149 278 - -
Trre13g04769 812 FunFam Sucrose synthase 12 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04769 Trre-Chr13 54421721 54426760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04769 3 810 Glycosyltransferase AT4G02280 83.168 0.0 1435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04769 K00695 - gmx:100793371 1491.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04769 13 54421721 54426760 Trre13g04769 13 54421721 54426760 ECH