Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04730 ATGGAAACAATTGCGGCTATGGATGTTGAGGAACAACCTTCGCCCACACCCAACAACGTTAAACGCTTCGGTCTTAAAAACTCAATTCAAACTAATTTCGGCGACGACTATGTTTTCCAAATCATTCCAAAGGATGATTGGAGTGCAATGGCGGTTTCATTGTCAACGAATGCAGTGAAATTGTATTCACCAGTGGCGGGTCAATATTATGGAGAGTGCAAGGGGCACTCTGCAACTATCAACCAGATTTTGTTTTCGGGTCATTCTGATAATCATCATATTCTAAGCTCATGTTCTTCAGATGGTACTATCAGAGCTTGGGACACAAGAACATTTCAGCAGGTTTCTACTATCGATGCTGGTCCTTCACAAGAAATCTTCAGCTTTTCTATTGGAGGACCTGGTGGAAATTTAATTGCTGCCGGATGTGATTCACAGGTACTCATATGGGATTGGAGAAATAACAAGCAAATTGCATGCCTGGAAGATTCTCATGTGGACGATGTTACTCAGGTTCATTTTGTCCCTGGTGAACCAGGCAAGCTCATTTCGGCTTCAGTAGATGGGTTGATCTGCATATTTGATACCAGTGGAGATATCGATGATGATGATCATCTAGATTCAGTGATTAATGTGGGGACTTCTATTGCAAAGGTGGGGTTTTTTGAAGAAAACTATCAAAAACTTTGGTGTTTAACACATATTGAAACTCTTGGTATCTGGGACTGGAAAGATGGTAGAAATAAAGCAGACTTCTCAGATGCACGGACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTATTTTGTTGATTGTCACTACTCCAAAGAAGCCGAAAAACTATGGCTGATTGGCGGCACAAATGCAGGTACATTGGGTTACTTTCCTGTCAATTACAATGGAATGGCAACAATTGGAGCTGCAGAAGCAATTCTTGAAGGAGGTCATACAAGTATTGTTAGAAGTGTTCTACCTATGTCCAGAATTCATAGTGGACTTGGTAGCAGTAGTCATAGTGATAGCTCAGGCATTTTTGGATGGACAGGTGGGGAAGATGGAAGACTATGTTGTTGGTTGTCTGATGATTCCCCTCAAAAAAATCAATCTTGGATTTCAAGTTCATTGATTATGAAACCAGAAAGAACTTGCAAGAAAAATCGGCATCACCCCTACTAA 1182 0.4078 METIAAMDVEEQPSPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSAMAVSLSTNAVKLYSPVAGQYYGECKGHSATINQILFSGHSDNHHILSSCSSDGTIRAWDTRTFQQVSTIDAGPSQEIFSFSIGGPGGNLIAAGCDSQVLIWDWRNNKQIACLEDSHVDDVTQVHFVPGEPGKLISASVDGLICIFDTSGDIDDDDHLDSVINVGTSIAKVGFFEENYQKLWCLTHIETLGIWDWKDGRNKADFSDARTLASESWNLDHVDYFVDCHYSKEAEKLWLIGGTNAGTLGYFPVNYNGMATIGAAEAILEGGHTSIVRSVLPMSRIHSGLGSSSHSDSSGIFGWTGGEDGRLCCWLSDDSPQKNQSWISSSLIMKPERTCKKNRHHPY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04730 393 Gene3D - 163 377 IPR015943 GO:0005515
Trre13g04730 393 Gene3D - 14 162 IPR015943 GO:0005515
Trre13g04730 393 Pfam WD domain, G-beta repeat 70 108 IPR001680 GO:0005515
Trre13g04730 393 SMART WD40_4 111 151 IPR001680 GO:0005515
Trre13g04730 393 SMART WD40_4 154 195 IPR001680 GO:0005515
Trre13g04730 393 SMART WD40_4 66 108 IPR001680 GO:0005515
Trre13g04730 393 PANTHER UNCHARACTERIZED 19 390 IPR039328 -
Trre13g04730 393 ProSitePatterns Trp-Asp (WD) repeats signature. 95 109 IPR019775 -
Trre13g04730 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 117 IPR001680 GO:0005515
Trre13g04730 393 SUPERFAMILY WD40 repeat-like 36 360 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04730 Trre-Chr13 54191330 54194854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04730 K24758 - gmx:100794786 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04730 13 54191330 54194854 Trre13g04730 13 54191330 54194854 ECH