Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04729 ATGCTTCCTCTTTCTCTTCTTAAGACTGCACAAGGCCACCCTATGTTGGTGGAGCTGAAAAATGGAGAGACTTATAATGGCCATTTGGTTAATTGTGATACATGGATGAACATTCATCTTCGAGAAGTTATTTGTACCTCTAAAGATGGAGATAGGTTTTGGCGGATGCCCGAGTGTTATATACGAGGCAATACGATTAAGTACCTTCGTGTTCCTGATGAGGTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTACAGATCGCAAGCCACCTGGTGTGGGACGTGGTAGGGGAAGAGGGGGAGGTAGGGAGGAAGGTGCTGGTTCTGGTGCTGGTGGACGCCAACCAAAAGGTATTGGGCGTGGTTTTGATGATGGTGGTGCTAGAGGAGCTGGAGGCCGAGGTAGGGGTAGCCAAGGTGGAAAGCCCGGAGGAAGCAGAGGTGCTGGACGAGGTAGAGGTTGA 468 0.4936 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGGGREEGAGSGAGGRQPKGIGRGFDDGGARGAGGRGRGSQGGKPGGSRGAGRGRG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04729 155 Gene3D - 1 83 - -
Trre13g04729 155 SMART Sm3 5 71 IPR001163 -
Trre13g04729 155 ProSiteProfiles Sm domain profile. 2 75 IPR047575 GO:0003723
Trre13g04729 155 Pfam LSM domain 6 70 IPR001163 -
Trre13g04729 155 MobiDBLite consensus disorder prediction 79 103 - -
Trre13g04729 155 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 2 133 IPR027141 GO:0006396
Trre13g04729 155 FunFam U6 snRNA-associated Sm-like protein LSm4 1 83 - -
Trre13g04729 155 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Trre13g04729 155 MobiDBLite consensus disorder prediction 79 155 - -
Trre13g04729 155 SUPERFAMILY Sm-like ribonucleoproteins 3 122 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04729 Trre-Chr13 54187050 54189443 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04729 K12623 - gmx:100500134 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04729 13 54187050 54189443 Trre13g04729 13 54187050 54189443 ECH