Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04728 ATGGAGGGGTTCATGTCTCATTCTTCAACTTTTCTTCTTCCTCCTCCTCTGGATAATAATAATAATTCTTCTTCTGTTTCTTTCAAATACGCTCTCGTTATTCTCAATCAAAACCTCCCCAAATTCGCTCCTCTGCTTTGGGACCACGCACATATACGAGTCTGCGCTGATGGTGGTGCCAACCGCGTGTTTGATGAAATGCCTCTTTTCTTCCCCAAACTTAATCCTTCTCATGTTCGCACCAGGTACAAGCCTGATGCAATCAAAGGTGACATGGATTCAATCAGGACAGAAGTACTTGATTTCTATGCAAAGCTGGGAACGAAGATAATTGACGAGTCTGAAGATCAGAACACCACGGATTTACACAAATGTGTTGCATACATACGTGACCTTACACCAGATACTGATAAATCAGAATTATGCATTCTTGCTGTTGGAGCACTTGGTGGGAGATTTGATCACGAGATTGGAAATATTAATGTGTTATGTCGATTCTCCAACACACGTGTTATCCTTCTATCTGACGATTGCCTCATTCACCTTCTTCCAAAGAATCATTCGCATAAGATCTTCATTCAATCTTCTGTCGAGGGTCCACATTGTGGACTCGTTCCCATTGGGATGCCATCTGGAAGTTCTACAACCACGGGACTCCAGTGGAACCTCAATGAAACGGAGATGAGATTTGGTGGTTTAGTTAGCACATCAAATATTGTGAAAGGAGATATAGTAACAGTACAGTCTGATTCAGATCTTCTCTGGACAATTTCTATCAAGAAGCTATAG 789 0.417 MEGFMSHSSTFLLPPPLDNNNNSSSVSFKYALVILNQNLPKFAPLLWDHAHIRVCADGGANRVFDEMPLFFPKLNPSHVRTRYKPDAIKGDMDSIRTEVLDFYAKLGTKIIDESEDQNTTDLHKCVAYIRDLTPDTDKSELCILAVGALGGRFDHEIGNINVLCRFSNTRVILLSDDCLIHLLPKNHSHKIFIQSSVEGPHCGLVPIGMPSGSSTTTGLQWNLNETEMRFGGLVSTSNIVKGDIVTVQSDSDLLWTISIKKL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04728 262 PIRSF TPK1 2 262 IPR016966 GO:0004788|GO:0005524|GO:0009229
Trre13g04728 262 FunFam Thiamine pyrophosphokinase 172 261 - -
Trre13g04728 262 SUPERFAMILY Thiamin pyrophosphokinase, substrate-binding domain 181 261 IPR036371 GO:0009229
Trre13g04728 262 Pfam Thiamin pyrophosphokinase, catalytic domain 45 170 IPR007371 GO:0004788|GO:0005524|GO:0009229
Trre13g04728 262 Pfam Thiamin pyrophosphokinase, vitamin B1 binding domain 189 254 IPR007373 GO:0009229|GO:0030975
Trre13g04728 262 Gene3D - 171 261 - -
Trre13g04728 262 SMART TPK_B1_binding_a_2_a 187 253 IPR007373 GO:0009229|GO:0030975
Trre13g04728 262 FunFam Thiamine pyrophosphokinase 28 170 - -
Trre13g04728 262 Gene3D Thiamin pyrophosphokinase, catalytic domain 30 170 IPR036759 GO:0004788|GO:0005524|GO:0009229
Trre13g04728 262 SUPERFAMILY Thiamin pyrophosphokinase, catalytic domain 27 179 IPR036759 GO:0004788|GO:0005524|GO:0009229
Trre13g04728 262 CDD TPK 31 257 IPR007371 GO:0004788|GO:0005524|GO:0009229
Trre13g04728 262 NCBIfam thiamine diphosphokinase 32 257 IPR006282 GO:0004788|GO:0006772
Trre13g04728 262 PANTHER THIAMIN PYROPHOSPHOKINASE 5 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04728 Trre-Chr13 54181521 54184333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04728 K00949 - gmx:100786303 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04728 13 54181521 54184333 Trre13g04728 13 54181521 54184333 ECH