Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04726 ATGTTAGAAAAATGTTTGGGACCTCAAAGAGCTAGAAAATTTCAGAGATTTCTCAACCATTGTAAGGTTACAATTCTCTGTCTCTTCCTCACCATTATTGTCCTACGTGGCACCATCGGCGCCGGTAAATTCGGCACACCGGAGCAAGATTTCGTCGACATTCGCAACCGTTTCACCTCTCGTAAGCTACCAGAATCATCTCACCGTATTCTCGGCGAGATAAATTCAACAACATCGTCTTCATCTTCTTCACATTCAGATAGTTCAACTTCTTCAACAACCAATTACAACGCTTTTGATATCAACACAATATTGGTCGATGAAGAAGAACAAGAAGAAGACAAAAAAAAGAGCTCGAATGAGCCTTATCGTTTAGGACCAAAAATTTCGAATTGGGATGAACAGAGATCAAAATGGCTTCTTGAAAACCCCAATTTTTCAAATTTTATTCGACCCGAAAAGCCTCGTGTGCTTTTGGTAACTGGGTCATCGCCAAAACCGTGTGAGAATCCAGTTGGTGATCATTACTTGTTGAAGTCGATTAAGAACAAGATTGATTATTGTCGTTTACATGGTATTGAGGTTTTTTACAATATGGCTCTTTTTGATGCTGAAATGGCTGGTTTTTGGGCAAAGTTACCATTGATTCGTAATCTTCTTTTATCACATCCAGAAGTTGAGTTTTTATGGTGGATGGATAGTGATGCCATGTTTACTGATATGGCTTTTGAGGTTCCTTGGGAGAGGTATAAAGATTCTAATTTGATTATGCATGGTTGGAATGAGATGGTGTATGATCAGAAGAATTGGATTGGGTTGAATACTGGGAGTTTTTTGTTGAGGAATTGTCAATGGTCATTGGATATTCTTGATGCTTGGGCACCAATGGGACCGAAAGGTAAAGTTAGGGATGAAGCGGGGAAAGTGCTTACACGCGAACTCAAAGATAGGCCGGTTTTTGAAGCGGATGATCAATCTGCTATGGTTTATTTGTTGGCTAAAGAGAAGGAAAAATGGGGTGATAAGGTTTATCTTGAGAATGGTTATTACTTGCATGGTTATTGGGGGATTTTGGTTGATAGATATGAGGAAATGATTGAGAATTATCAACCTGGTTTTGGTGATCATAGGTGGCCATTGGTGACTCATTTTGTGGGGTGTAAGCCTTGTGGGAAGTTTGGGGATTATCCTGTTGAAAGATGCTTGAAGCAGATGGATAGAGCTTTCAATTTTGGTGATAATCAGATATTGCAGATTTATGGATTCACACATAAGTCATTGGTTAGTAGGAGAGTTAGGAGAATAAGGAATGAGACTAGTAATCCTCTTGAGGTTAAAGATGAACTTGGTTTGCTCCATCCAACTTTTAAAGCTGTTGAGGTATCATCTTCTAGGTGA 1398 0.3927 MLEKCLGPQRARKFQRFLNHCKVTILCLFLTIIVLRGTIGAGKFGTPEQDFVDIRNRFTSRKLPESSHRILGEINSTTSSSSSSHSDSSTSSTTNYNAFDINTILVDEEEQEEDKKKSSNEPYRLGPKISNWDEQRSKWLLENPNFSNFIRPEKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEVFYNMALFDAEMAGFWAKLPLIRNLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNLIMHGWNEMVYDQKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDEAGKVLTRELKDRPVFEADDQSAMVYLLAKEKEKWGDKVYLENGYYLHGYWGILVDRYEEMIENYQPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLVSRRVRRIRNETSNPLEVKDELGLLHPTFKAVEVSSSR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04726 465 MobiDBLite consensus disorder prediction 69 95 - -
Trre13g04726 465 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 9 449 IPR008630 GO:0016020|GO:0016757
Trre13g04726 465 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 153 309 IPR029044 -
Trre13g04726 465 FunFam xyloglucan 6-xylosyltransferase 2 153 304 - -
Trre13g04726 465 MobiDBLite consensus disorder prediction 108 129 - -
Trre13g04726 465 MobiDBLite consensus disorder prediction 70 95 - -
Trre13g04726 465 Pfam galactosyl transferase GMA12/MNN10 family 154 393 IPR008630 GO:0016020|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04726 Trre-Chr13 54168576 54169973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04726 1 464 Glycosyltransferase AT3G62720 75.431 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04726 K08238 - gmx:100794266 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04726 13 54168576 54169973 Trre13g04726 13 54168576 54169973 ECH