Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04721 ATGGCAGTGGTTGCAGCGCCACAATTCTTGTTCTTCTCATCAGAATCAAATTGGAGAATTACAACAACAACATCATCAAGAACATGTCTTCCTCTTCCTAAGTTCAACTCCATTCTTCTACTCTCACGCAATAACAAGATTCATTTTCCACTCATTTCATGCTCTTCATCATCACAGACACCAGAAACTCAAACTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTCAGCTCTTTTCCAAAGGAAAGGTTAAAGATGCTTTGACTCAGTTTGAAACAGCACTTTCTTTGAATCCCAATCCTGTAGAGGCTCAAGCTGCATTCTATAACAAAGCTTGTTGTCATGCATATAGAGGAGAAGGAAAGAAAGCTGCCGATTGTCTCCGCACTGCTTTGAGGGAATACAACCTGAAATTTGGTACAATTCTCAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCCAGGCTGGGTGGAGAAGATGTTGGCTCCAGTTTCCGAAGAGATCTAAAACTTATCAGTGAAGTTCAAGCCCCGTTTCGTGGGATTAGGAGATTCTTTTCCGTAGCATTTACAGCTGCTGCAGGAATATCATTGTTTTTTAATATACCGAGGATATTGCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATCTTTTGGAAACTGCTGGCAATGCTGCCGTTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCTTATGGGACAATAAAAAAGAGGAGGAACAGCTTGCGCAAATATCCCGAAATGAGATACTATCAAGGTTGCCTTTGCGCCTGTCAACTAATCGCGTAGTTGAACTCGTGCAGCTAAGGGACATAGTTAGGCCAGTTATCTTAGCTGGGAAAAAAGAAACCGTGACTTTAGCTTTGCGAAAAGCAGAGAGATTTCGCACTGACCTACTTAGACGCGGTGTTTTGTTAGTTCCTGTCATCTTCGGTGAAGGTAGAAACCCCAAAATTGAAAAGAAAGGTTTTGGCCGTAAACCAAAGGTTGCTGAGGCTCTTCCATCCATTGGGGAAGATTTTGAGAAGCGAGCACAGTCCGTAACTGCACAATCAAAATTGAAAGCTGAAGTTAGGTTCAAGGCGGAGGTTGTATCACCAGCTGAATGGGAACGGTGGATAAGAGATCAGCAGGAGTCTGAAGGAGTTCGAGTTGGTGAAGATGTGTACATAATACTGCGCTTAGATGGGCGAGTTCGAAGGTCTGGTAAAGGTATACCTGACTGGGAGCAAATCGCGAAGGAGCTGCCGCCAATGGATGCAATTTTAAGCAAGCTAGAAAGATGA 1341 0.4325 MAVVAAPQFLFFSSESNWRITTTTSSRTCLPLPKFNSILLLSRNNKIHFPLISCSSSSQTPETQTQTAESCVNLGLQLFSKGKVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFSVAFTAAAGISLFFNIPRILRAIQGGDGAPDLLETAGNAAVNIGGIVVFVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRVVELVQLRDIVRPVILAGKKETVTLALRKAERFRTDLLRRGVLLVPVIFGEGRNPKIEKKGFGRKPKVAEALPSIGEDFEKRAQSVTAQSKLKAEVRFKAEVVSPAEWERWIRDQQESEGVRVGEDVYIILRLDGRVRRSGKGIPDWEQIAKELPPMDAILSKLER 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04721 446 SMART tpr_5 68 101 IPR019734 GO:0005515
Trre13g04721 446 SMART tpr_5 105 138 IPR019734 GO:0005515
Trre13g04721 446 Gene3D Tetratricopeptide repeat domain 54 153 IPR011990 GO:0005515
Trre13g04721 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 58 444 - -
Trre13g04721 446 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Trre13g04721 446 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 55 161 - -
Trre13g04721 446 SUPERFAMILY TPR-like 63 134 IPR011990 GO:0005515
Trre13g04721 446 Pfam Low psii accumulation1 / Rep27 176 253 IPR021883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04721 Trre-Chr13 54151716 54154984 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04721 - - gmx:100793204 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04721 13 54151716 54154984 Trre13g04721 13 54151716 54154984 ECH