LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04691	ATGAACAGCTTAACGGCGAGCTTCACCGCTCGAATATACGCCACACGCCACGACGCAATTCCGTTACGACACCGTTCACTTCACCAATTCATTAACAGACGCGTCACTGTTCTTCCCACCAGAACCACTCTCATTTCCACAAGATTCGTCTGCATGGCGGAACCTTATCTGTTATTGAAGCTTGAATCTGCTGAGAAAACATGGAAAGAATTATCGGTGAAGCTTGCTGATCCAGATATTGTTTCTAATCCCAGTGAGTATCAGAAAATAGCACAATCAGTATCCGAACTTGACGTGGTTGTGACTTTGTATCAGAAATTTAAAGACTGTGAGAAGATGCTTGAAGAAGCCAAAGCTTTAGCAAAGGATGATGGCAATGACGAGGATATGGCGGAAATGATATCTTATGAAATTGAATCTTTGTCCAAACAACTCTCAGAGCTAGAGGACAAGCTGAAGGTTTTACTGCTTCCCAGTGATCCTCTGGATGCAAGAAACATAATGCTTGAAGTAAGAGCAGGTACTGGTGGCGATGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAAATTTAGTGAACTTAATTCTTGGAAGCATTCTACCGTCTCCTTCTCTGAGGCAGAAAAAGGGGGATTCAAAACTTATGTGATGGAGATAAAAGGAAATCGTGTCTATAGTAAATTAAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCTCTAACAGAAACACAGGGCCGCGTACATACTTCTACTGCAACAGTGGCCATTATGCCAGAGGTTGATGAAGTCGAAGTCACAATTGACCCGAAAGATATTGAAATTACAACGGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAATAAGGTTGAAACAGCAATTGATCTTGTTCATAAACCAACGGGAATCCGCATCTTTTGTACTGAACAAAGGACTCAGATTCAGAACAAGAATCTTGCTTTAAAGTTACTGCGAGCCAAACTATATGAGATAAAGGTAAGGGAGCAGCAAGAGTCAATACGAAATGAAAGAAAATCACAGGTTGGTACAGGAGCACGTGCAGAAAAAATCCGGACATACAATTTTAAGGACAACAGGGTTACTGACCACAGATTGAAGAGGAACTTTGAGCTCACCAATTTTCTAGGTGGTGACATAGAGGATGCTGTTCAGTCTTGTGTTTCAATGGAACAAAAGGAGCTTATGGAAGAACTTGTTGAGTCTATGGGTGCTTCTGCTCAATAA	1260	0.4214	MNSLTASFTARIYATRHDAIPLRHRSLHQFINRRVTVLPTRTTLISTRFVCMAEPYLLLKLESAEKTWKELSVKLADPDIVSNPSEYQKIAQSVSELDVVVTLYQKFKDCEKMLEEAKALAKDDGNDEDMAEMISYEIESLSKQLSELEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKFSELNSWKHSTVSFSEAEKGGFKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEVDEVEVTIDPKDIEITTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEQRTQIQNKNLALKLLRAKLYEIKVREQQESIRNERKSQVGTGARAEKIRTYNFKDNRVTDHRLKRNFELTNFLGGDIEDAVQSCVSMEQKELMEELVESMGASAQ	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04691	419	SMART	PCRF_a_2	119	234	IPR005139	GO:0006415
	Trre13g04691	419	FunFam	Peptide chain release factor 1	163	273	-	-
	Trre13g04691	419	ProSitePatterns	Prokaryotic-type class I peptide chain release factors signature.	283	299	IPR000352	GO:0003747\|GO:0006415
	Trre13g04691	419	Gene3D	-	51	161	-	-
	Trre13g04691	419	Hamap	Peptide chain release factor 1 [prfA].	57	411	IPR004373	GO:0006415\|GO:0016149
	Trre13g04691	419	SUPERFAMILY	Release factor	66	407	IPR045853	-
	Trre13g04691	419	Gene3D	-	265	360	-	-
	Trre13g04691	419	Pfam	RF-1 domain	266	376	IPR000352	GO:0003747\|GO:0006415
	Trre13g04691	419	Coils	Coil	131	151	-	-
	Trre13g04691	419	PANTHER	LD18447P	52	413	-	-
	Trre13g04691	419	NCBIfam	peptide chain release factor 1	53	411	IPR004373	GO:0006415\|GO:0016149
	Trre13g04691	419	Gene3D	-	169	395	-	-
	Trre13g04691	419	FunFam	Peptide chain release factor 1	265	360	-	-
	Trre13g04691	419	Pfam	PCRF domain	65	259	IPR005139	GO:0006415
	Trre13g04691	419	FunFam	Peptide chain release factor 1	335	414	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04691	Trre-Chr13	53971930	53977564	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04691	K02835		-	gmx:100777225	671.774

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g04691	13	53971930	53977564	Trre13g04691	13	53971930	53977564	ECH