Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04681 ATGAGGTGTTCACTTGGTTGGATTGCTTCACCAGCTATCAATTCAGATGTTCAATTTTTGCAAGCTTCTTGTAATAAGGAAATTTCCCTCAGTCTTATTATACAGGTGAGCAAGGTGAAACTGTATCCTTTGATCCGAGGAAGTAGTATTTTGCAGTTCCGCAAGCTTATTAGAGCACATGATACTTATTCAGCATCTACTACAACAGTGGCTACCCTTAAGCAAAAGCTAATTGCTGAGTGGCCTCAAGGCAAAACTGTTGTACCAAAGTCAATCAATGATGTAAAACTTATACACGCCGGTAAAGTTTTGGAAAACACCAAAACGCTTGCTGATTCCAAGATAACTTTCAGTGATATCCCTGGTGCTATTACCATGCATGTTGTAGTACAGCCTCCTATAGCTAAAAAAAAGACAGGTTTGTTTAATCTTCTCATTTTTGCTTTTGCTGAAGTGGTATGGCTACGAGTACCTTTGGTTGGGTACAGGAATCACATATTAATAGTAATAATAGAGAAGGAGAGCAAGCAAAAGATGAATTCGTGCTCATGCTCATGCACTATCCTATAG 570 0.3877 MRCSLGWIASPAINSDVQFLQASCNKEISLSLIIQVSKVKLYPLIRGSSILQFRKLIRAHDTYSASTTTVATLKQKLIAEWPQGKTVVPKSINDVKLIHAGKVLENTKTLADSKITFSDIPGAITMHVVVQPPIAKKKTGLFNLLIFAFAEVVWLRVPLVGYRNHILIVIIEKESKQKMNSCSCSCTIL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04681 189 Gene3D - 49 139 - -
Trre13g04681 189 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 44 187 IPR040015 -
Trre13g04681 189 SUPERFAMILY Ubiquitin-like 65 136 IPR029071 -
Trre13g04681 189 CDD Ubl_MUBs_plant 51 133 - -
Trre13g04681 189 Pfam Ubiquitin-2 like Rad60 SUMO-like 63 139 IPR039540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04681 Trre-Chr13 53899812 53902061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04681 - - mtr:11423397 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04681 13 53899812 53902061 Trre13g04681 13 53899812 53902061 ECH