Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04664 ATGTTAAGTCTTTGTGTGAGAAAAAGTATTCCCTATTCGAGGCCTTTTTTTGTCGATAGCTTCTGCAGATTATTGTCTACTGAGACTGGAAGGAAGCTACAAGATAAGGTAGCACTGATAACTGGAGGAGCTAGTGGAATAGGAAAAGCAGCAGCAACAAAATTCATCAATAATGGTGCAAAAGTAATTATTGCTGATATCCAACAACAACTTGGCCAAGAAACTGCAAAAGAACTAGGACCTAATGCTACTTTCATAACTTGCGACGTCACGAAAGAATCAGACATATCCAAAGCAGTTGATTTCGCCGATTCTGAATACAAACAACTTGATATCATGTATAACAATGCAGGCATACCCTGCAGAACTCCTCCAAGCATTGTTGACCTTGATTTAGAATCATTTGACAAAGTCATGGAAATTAATGTTCGTGGTATTATGGTTGGCATCAAGCATGCAGCACGTGTAATGATCCCACGTAAAACTGGATCGATTCTATGCACTGCTAGTGTCACTGGAGTGATTGGAGGGATGGCGCAGCACACGTATTCAGTATCGAAGTTTGCGGTTATAGGCATTGTTAAATCTTTGGCTTCAGAGCTATGCAGGCATGGAATTCGAGTCAACTGTATATCACCTTTTGCTATCCCTACTCCGTTTGTTATGAACGAAATGGATGAGATATATCCACATCTCGATTCAAAGCGAATTGTAGAAATTGTTCGTAATGTAGGTGTTCTGAAAGGAGCGAATTGTGAACCTAATGATATCGCTAATGCTGCACTTTACCTTGCATCTGATGATGCTAGGTATATCAGTGGACATAATTTAGTTGTGGATGGAGGTTTCACATCTTTTAAGAGTTTGGAGTTTCCTGCACCAGATCAAGTGCAGTAG 897 0.4013 MLSLCVRKSIPYSRPFFVDSFCRLLSTETGRKLQDKVALITGGASGIGKAAATKFINNGAKVIIADIQQQLGQETAKELGPNATFITCDVTKESDISKAVDFADSEYKQLDIMYNNAGIPCRTPPSIVDLDLESFDKVMEINVRGIMVGIKHAARVMIPRKTGSILCTASVTGVIGGMAQHTYSVSKFAVIGIVKSLASELCRHGIRVNCISPFAIPTPFVMNEMDEIYPHLDSKRIVEIVRNVGVLKGANCEPNDIANAALYLASDDARYISGHNLVVDGGFTSFKSLEFPAPDQVQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04664 298 PRINTS Glucose/ribitol dehydrogenase family signature 247 267 IPR002347 -
Trre13g04664 298 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Trre13g04664 298 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Trre13g04664 298 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Trre13g04664 298 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Trre13g04664 298 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Trre13g04664 298 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 170 198 IPR020904 GO:0016491
Trre13g04664 298 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 31 287 - -
Trre13g04664 298 FunFam Short-chain dehydrogenase reductase 25 288 - -
Trre13g04664 298 Gene3D - 24 290 - -
Trre13g04664 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Trre13g04664 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Trre13g04664 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Trre13g04664 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 284 IPR036291 -
Trre13g04664 298 Pfam Enoyl-(Acyl carrier protein) reductase 42 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04664 Trre-Chr13 53815604 53817282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04664 28 283 Acyl Lipid Metabolism Gene Families AT1G24360 28.736 1.21e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04664 - - gmx:100814306 475.322