Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04662 ATGGCGAACACTCAACCTTCTTCTTCACCTGGAGATGAAGTCAGAGATGCAAATGGAGATGAACATAATCAGGAAACTGAGCTTTTTGAGGACACATTAGTGATCCATAGTCCCTTCATTGAAACTGAGGTGCAAAATCTCGATCTGAATGCTGAGTATGTAGAGGATTCAGAGCCTGTGGAGAGCATGACATTGATAACTGCTGCAACATGTGAGTATGAGCAAGAAGTGGTGCATGACAGTGAGGATGAAGAAATGAATAATACGGGCAAAGTGACTGTTGCTGAAAGATTTTTTGAGGATGGAAGTAGTCCAGTAGTGAACAATTCTTTAGTGCTCTTCAAGAAGAAATTGCCTAAGCTACCATGTGAGCAAGCAAACTCAAAATCAAATGCCGCTACATCTGGGAAATCTGGTACTGGGGATGAAAGAGCTTCAATTGATGCTGAGAGCTTTGATGACAACAAGCATCAATATCTACCTGCTAGGTTATATGATGTTTGCTCACCAGAGCCTGGGGATTCAACCGTAGCTGCACTAGGCTTCGTGGATCAGTACTTGTCGTCAATAGATGTGGACCTGTTTCAAGGAGTTCAAAATGGAAAGATTGCTAGGGAGAAATCGCCTCATGTCTCGAGTGCAAGAGGATCAATTAGTTTGGCTAAGAAATTTAGAGCTCGAACTCAAAATGAAGATAAAGATCCTTTCGAATGGGATGACAGTGTTCAAAATGAAAAAGAAGCTGGTATTTTCTCTAAAAAGCTTGAAGCATCTTTCAATATTGGAAGCCATGGACTGGCATATAAGAGAAGACAGAAAAAAGGTAGTCATCCTCCAAACCAAGGAAAATGTAGTGCAAGTAATAGATGTGATGAGAATTTATTGCAAGAACCAAGAATGGAAGCTGACAATAATAACCATCTCAAGGAGTTGGATGTTGAATCGTGTGCCACAAGAGAGAATGCCGATATTTATTCTGGTGTTGCACGTACAGAAGACATGTATGATATTGGCTTAGACACTCAAATAGCTGCTGAAGCTATGGATGCCTTAGCAAATCTGTCCCCTGCTGGCTTTCATTTAAGTGATGCTCACCAACAAGAGAACGCATTTGATGCGTCTTTGAGTGATTTGAAACAAGCTCATCAGAAAAATTCTCCATCTAAAGAGAATCCTGGTTCACATTCTATTGCTCTAAAATCCTACAAGAGAAATGTTTCTTCTCGTAGATTTAGCAAAGTAACTTCTAGTTCCTCTTGCAAGGACACTAACAGTCAGGAATCAAATCCTGTCTCGGGGAAAATGAAAAAAACAATGGGAAGCAAGTCAAGTGTTGAGGGGAAGTTCAAAAATAACGCTAGTCCATCAATATGCAATGAACATGTATCGCATGAAGAGGTTTGTTTACCAGGAGAAGATAGGAGTTTTCAATCTGCTTCCAAAGAACCCAAAATCCAGAATAAGAGCAAATGGACAAGAGTGAAACGTCAACCAAGCCATCCTAGAGAGAGGAACAATAATGTTGAGAAGGATACTATTAGATATAAGAGGAAGGGAAATTGTTTAGTGGCAGATCCAGTGAAGATAGACATTAAGACGAAACGTCTTAATTCATCTATTAGTTCATATGGTGTGGTTAGGAAGAGCAGTTTGAAACATCAGGTTGAAGTTAGTCCACAACTATCCGCAACCAGCTGTTTTTCAAAGATTGATTCTTGGGCTTATCCAAAAGGACCAAGAGGGAAACGAAAGCGAGCCACTGCCCCGAGATTTTTATGTATTGATGATAAAGAAAACAATGTATATTCCACTAAAATTCTAGAGGGCCAAGATGATGTGCATAAATCATGTCTTCCCCTGGTTTCAGCAGGTGATGCTATAAAAATTGAAAACCTGCATGATATGCAACCCTTGTTGCTGGCACATGTTGAAATATTATCAAACAAGAGTGTTGTACAATCGAGTTCAGAAATTTCAGCTTCAGTTGGTCCAGTTGAAGGCATAAAAGTTTCAAATGCTAACCATACAAGCAATGAACGACGCAAAAAGGCGTGTGACAAAAACCTGCCAAAGTCTTCACTTTTGAAGGAACTTATCAGATTAGGAGTTCCCAAACCCACATCAGAAATGATGAGTAAAGATCCAAGACATCGCAGAGATATGACAAATGTGCGAGTTCTGTTTAGCCAACATTTGGATGACAGCGTCCTCAAGCAACAACAGAAGATCTTGACACGTCTTAATATATCTACTGCATCAAGCTCAAGGGAGGCCACTCATTTCATAGCAGACAAGTTTACACGTACAAAGAATATGCTGGAAACAATGGCTCTTGGGAACTTAGTATTGACACACTTATGGCTGGAGAGTTGTGGACAAGCCAACTGTTTTATTGATGAGAAAAATTATATTTTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTTAGCATGCCAGTTTCTCTTGCTCAAGCAAGACAAAAGCCACTTCTGAAGGACAAACGAGTCTACATAACACCACACATCAAACCTAATAAGGAAGTGGTTGCGAGCTTGGTTACAGCTGTTCATGGCCAGCTAGTGGATGAAAATCAGATATTTGCAGACAAGAATGATAATGTCTTAGATGATCTATTGATTCTTTCTTGTGATGAAGACTTTGCAATATGCCGTCATTTCCTTAAGAGAGGAGCTGCTGTTTACAGTTCAGAGCTTCTTCTGAATGGAATTGTAATCCAGAAATTAGAACTCGAGAGGCATAAACTGTTCGTGAATCAAGTTACAAAGAATAAACTAGGTAGATGTAATTGGTTTGGGAAGGTTTACAGAAGGCGTTTGATGCCTTCATCTTGA 2853 0.3975 MANTQPSSSPGDEVRDANGDEHNQETELFEDTLVIHSPFIETEVQNLDLNAEYVEDSEPVESMTLITAATCEYEQEVVHDSEDEEMNNTGKVTVAERFFEDGSSPVVNNSLVLFKKKLPKLPCEQANSKSNAATSGKSGTGDERASIDAESFDDNKHQYLPARLYDVCSPEPGDSTVAALGFVDQYLSSIDVDLFQGVQNGKIAREKSPHVSSARGSISLAKKFRARTQNEDKDPFEWDDSVQNEKEAGIFSKKLEASFNIGSHGLAYKRRQKKGSHPPNQGKCSASNRCDENLLQEPRMEADNNNHLKELDVESCATRENADIYSGVARTEDMYDIGLDTQIAAEAMDALANLSPAGFHLSDAHQQENAFDASLSDLKQAHQKNSPSKENPGSHSIALKSYKRNVSSRRFSKVTSSSSCKDTNSQESNPVSGKMKKTMGSKSSVEGKFKNNASPSICNEHVSHEEVCLPGEDRSFQSASKEPKIQNKSKWTRVKRQPSHPRERNNNVEKDTIRYKRKGNCLVADPVKIDIKTKRLNSSISSYGVVRKSSLKHQVEVSPQLSATSCFSKIDSWAYPKGPRGKRKRATAPRFLCIDDKENNVYSTKILEGQDDVHKSCLPLVSAGDAIKIENLHDMQPLLLAHVEILSNKSVVQSSSEISASVGPVEGIKVSNANHTSNERRKKACDKNLPKSSLLKELIRLGVPKPTSEMMSKDPRHRRDMTNVRVLFSQHLDDSVLKQQQKILTRLNISTASSSREATHFIADKFTRTKNMLETMALGNLVLTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPVSLAQARQKPLLKDKRVYITPHIKPNKEVVASLVTAVHGQLVDENQIFADKNDNVLDDLLILSCDEDFAICRHFLKRGAAVYSSELLLNGIVIQKLELERHKLFVNQVTKNKLGRCNWFGKVYRRRLMPSS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04662 950 ProSiteProfiles BRCT domain profile. 716 805 IPR001357 -
Trre13g04662 950 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 109 922 - -
Trre13g04662 950 SUPERFAMILY BRCT domain 706 821 IPR036420 -
Trre13g04662 950 CDD BRCT_MDC1_rpt1 724 798 - -
Trre13g04662 950 Gene3D BRCT domain 711 828 IPR036420 -
Trre13g04662 950 MobiDBLite consensus disorder prediction 14 28 - -
Trre13g04662 950 MobiDBLite consensus disorder prediction 473 507 - -
Trre13g04662 950 MobiDBLite consensus disorder prediction 125 141 - -
Trre13g04662 950 CDD BRCT_PAXIP1_rpt6_like 830 916 - -
Trre13g04662 950 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 710 805 IPR001357 -
Trre13g04662 950 MobiDBLite consensus disorder prediction 379 453 - -
Trre13g04662 950 Gene3D BRCT domain 829 930 IPR036420 -
Trre13g04662 950 MobiDBLite consensus disorder prediction 125 145 - -
Trre13g04662 950 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04662 Trre-Chr13 53810249 53814829 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04662 - K20780 gmx:102659913 1097.42