Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04651 ATGATGCTAAGAATCCGAAGCCGCGATGGTCTAGAACGAGTAAAAATCGATAACCCAAACGGAACAACAGTTTCTGAACTCAAATCAATCATCGAAAATCAATTACGAATTCCAACACATAACCAAACCCTATCAACTAATCAAAACCTTTTACTAGTTAAATCACAACAAGATCTTCTTCGATTCACCGATATGTCAAACCCTAACACTCCTTTAACGGCGTTAAACCTTTCTCACGGTTCAATTATCTTTTTAGCTTACGAAGGTGAACGTAGGGTTCCCGGTCCAACCGCTTTTAGTCCTGCCGGTTCATTCGGTCGAAAGATGACTATGGATGATCTCATCGCTAAACAGGTGCGTGTTTCTCGTCAAGAGAATCCGCATTGTGAATTGGTTTCATTCGATCGCGATTGCGCGAATGCTTTTCAGCATTATGTTAATGAAACTCTTGCATTTGCTGTGAAAAGGGGTGGGTTTATGTATGGTACTGTTTCTGAAGAAGGTAAGGTTGAGGTTGATTTTATATACGAACCGCCGCAACAAGGTTCGGAAGATAATCTTGTGTTTTTTAGGGATCCAGAGGAAGAGAAATATGTAGAAGCTATTGCGGTTGGGTTAGGAATGAGAAGGGTTGGGTTTATTTTTACTCAAACTGTGAGTCAGGATAAAAAGGATTATACTTTATCTTATAGGGAAATTCTTCAGGCTTCTGAGTATCATGCTGAGAGTGGATTGAAGGAATGGGTTACTGCGATTGTGAAGCTTGAAGTGAATGAAGAAATGGGTGGTGCTGATGTTCATTTTGAAGCTTTTCAGATGAGTGATGTGTGTATTAGGTTGTTTAAGGAAGGTTGGTTTGATACTGAGATTAAGGAAGATCATGATCCTAAGTTGTCTATTATGAAGAAGGATGTTGTTGTTGGTGTTAAGGATACTAAAGAGGTTGATAATGATTTCTTTTTGGTTGTTGTCAAAATCGCTGATCATCAGGGTCCTCTTTCATCAGCATTTCCTGTTGAGAACCGGAATACTCAAGTGACTGCGATGGCGCTGAAGAATCATCTTGAAAGGACTAAAAATCTTCCATTTGTGAAGCGAATTTCAGATTTTCATCTTCTTCTTGTATTAGCAAGGATTTTGGACGTGTCTGCTGATGTTCCTGCATTGACAGAATGTGTGCAAACACAAAGTGCCGTACCAGAAGGTTACCAGATCCTCATCGAGTCCATGGCTAGCGCTGCTTGA 1245 0.4016 MMLRIRSRDGLERVKIDNPNGTTVSELKSIIENQLRIPTHNQTLSTNQNLLLVKSQQDLLRFTDMSNPNTPLTALNLSHGSIIFLAYEGERRVPGPTAFSPAGSFGRKMTMDDLIAKQVRVSRQENPHCELVSFDRDCANAFQHYVNETLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGSEDNLVFFRDPEEEKYVEAIAVGLGMRRVGFIFTQTVSQDKKDYTLSYREILQASEYHAESGLKEWVTAIVKLEVNEEMGGADVHFEAFQMSDVCIRLFKEGWFDTEIKEDHDPKLSIMKKDVVVGVKDTKEVDNDFFLVVVKIADHQGPLSSAFPVENRNTQVTAMALKNHLERTKNLPFVKRISDFHLLLVLARILDVSADVPALTECVQTQSAVPEGYQILIESMASAA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04651 414 FunFam NPL4-like protein 1 1 101 - -
Trre13g04651 414 Pfam NPL4 family 158 230 IPR007717 -
Trre13g04651 414 CDD Ubl_AtNPL4_like 1 85 - -
Trre13g04651 414 CDD MPN_NPL4 120 376 IPR007717 -
Trre13g04651 414 ProSiteProfiles MPN domain profile. 131 277 IPR037518 -
Trre13g04651 414 Pfam Nuclear pore localisation protein NPL4 1 51 IPR024682 -
Trre13g04651 414 Gene3D - 1 101 - -
Trre13g04651 414 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Trre13g04651 414 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 1 91 IPR016563 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04651 Trre-Chr13 53724261 53727579 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04651 K14015 - gmx:100779549 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04651 13 53724261 53727579 Trre13g04651 13 53724261 53727579 ECH