Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04608 ATGGTAACACTCTTAATCCTATGCATTCTTGGTTTCTACGCTTTTCATTTCCCACACTCTCTTATTTCTTCTTCAAACAAATCAACAACAATACAAAATCTCTTTCTCTCTTCTTCTTCAAACTCCACCATCTCTTCTTATCTCCGCACCCTCACCATACACCCTCACCTCGCCGGAACAAAACCCAATTCCGACACAGCACTTTTCCTTCTCAAACACTTCACTTCCTTAAACCTCAAAACCCACACAACATCGTACAAAACTCTTCTCTCTTACCCATTACACTCATCTCTCTCTTCTCATTTCACCAACGGTTCATTCATCAACCTTCCTTTAACTGAACCGTCTGAACCCGGTTCAGACATGGTTCATGCCTACCACGCTTATTCACCTTCCGGTTCAGTTTATGCTAAACCGGTTTTCGTTAACTACGGTAGAGATAAAGACTATCGTTCACTTGTTTCACTTGGTGTTAATGTTAAGGGATGTATAGTGATAGTGAGAAAAGGTGGTGGTTTAGGGAGGAGTATGGTGGTTGAAAAGGCTGAGAAAAATGGGGCTGCGGCGGTTTTAATTTACAACGATGAAATTGACACGTGGCGTAATGGGTTTGAGAGAGGTCACGTGATGAAGGGTGTAGGGGACCCATTGAGTCCTGGTTGGGGTAGTGTTGAGGGTAGTGAGAGGTTAAGTTTGGATGATAATGAAGTTTTGGAAAGGTTCCCTAAAATTCCTTCTATGCCAATTTCTGTTGATGTTGCTGATGCTGTTTTGTCTTCACTTGGTGAATCTATGATGCCCTTAGAATGGAGGAGTACCCTTAGAATTAAGGGTATTATACATGTTGGTCCTGGTCCCACTATGCTTAATTTTACCTACCTGGGTGAAAAGAAGGTGGCCACCATTCAGAATGTTTTTGCTGTCATAAAAGGATCAGAAGAACCTGATCGCTATGTTTTGCTTGGGAATCATAGAGATGCGTGGACTTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCCCTACTGGACCTTGCTCGCCGATACTCTATTCTACTAGCTTCAGGATGGAAGCCAAGGAGAACAATCGTTCTCTGCAGTTGGGATGCCGAGGAATTTGGCATGATAGGATCAACTGAATGGGTTGAACAGAACCTGATCAATTTGGGTTCCAAAGCTGTAGCGTACCTTAATGTGGATTGTGCTGTTCAAGGTCCTGGTTTCTTTGTTGGCTCAACTCCTCAGCTAGACAGTCTTATTCGCGATGTCACGAAAAAGGTCAAGGATCCTGACGCTGAGGGTGTATCAGTATACGAGACTTGGGCTGCGGCCGATGGAGGAAATAATATTCAAAGGCTCGGTAGAGTTGATTCTGATTTCGCTCCATTTGTGCAACATGCAGGGGTTCCATCGGTTGATATCTATTACGGAAAAGATTTTCCTGTCTATCACACTGCTTTCGACTCCTATAACTGGATGGCCGAGTATGGAGATCCATTCTTCAAGCGCCATGTTGCTGCTACTGGAATTTGGGGACTTTTAGCCCTTCGCCTAGCTGATGATTCCGTTCTTCCTTTCGATTACTTATCATATGCAAATGAGTTACAGTTATACAGGGACAAATTGAGCAACATGTTAGACCATAAAATTTCTCTGCATCCGTTAACCACGGCAATAGAAGAATTTGCTTCTGCTGCCAAAGAAGTTGACAATGAACTAAAGGAACTTAGATTGATAGAAACCGCAGATCAGTTTGTAGATATGAAAAGGCGAGCAATGAATGATAGACTGATGCTTGCAGAAAAAGGCTTCCTAGATGGAGATGGACTTAAGGGAAAACAGTGGTTCAAGCATCTTGTGTTTGGGCCTCCGAACGATGCTGAGAAGTTGGATTTTTTCCCTGGGATTGCTGATTCTATGACTAGGTTAACTGACACAAATAAAAGAGAAAGGCTGGCAGATATTCAACATGAGATCTGGAGGGTTACTAGAGCCATTCAAAGAGCTACTTCTGCACTTAGAGGAGAATTCATCTAA 2037 0.4315 MVTLLILCILGFYAFHFPHSLISSSNKSTTIQNLFLSSSSNSTISSYLRTLTIHPHLAGTKPNSDTALFLLKHFTSLNLKTHTTSYKTLLSYPLHSSLSSHFTNGSFINLPLTEPSEPGSDMVHAYHAYSPSGSVYAKPVFVNYGRDKDYRSLVSLGVNVKGCIVIVRKGGGLGRSMVVEKAEKNGAAAVLIYNDEIDTWRNGFERGHVMKGVGDPLSPGWGSVEGSERLSLDDNEVLERFPKIPSMPISVDVADAVLSSLGESMMPLEWRSTLRIKGIIHVGPGPTMLNFTYLGEKKVATIQNVFAVIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDLARRYSILLASGWKPRRTIVLCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAVQGPGFFVGSTPQLDSLIRDVTKKVKDPDAEGVSVYETWAAADGGNNIQRLGRVDSDFAPFVQHAGVPSVDIYYGKDFPVYHTAFDSYNWMAEYGDPFFKRHVAATGIWGLLALRLADDSVLPFDYLSYANELQLYRDKLSNMLDHKISLHPLTTAIEEFASAAKEVDNELKELRLIETADQFVDMKRRAMNDRLMLAEKGFLDGDGLKGKQWFKHLVFGPPNDAEKLDFFPGIADSMTRLTDTNKRERLADIQHEIWRVTRAIQRATSALRGEFI 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04608 678 SUPERFAMILY PA domain 89 306 IPR046450 -
Trre13g04608 678 Pfam PA domain 140 197 IPR003137 -
Trre13g04608 678 Gene3D Zn peptidases 42 525 - -
Trre13g04608 678 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 4 675 IPR039373 -
Trre13g04608 678 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 526 676 - -
Trre13g04608 678 Pfam Peptidase family M28 304 491 IPR007484 -
Trre13g04608 678 SUPERFAMILY Transferrin receptor-like dimerisation domain 525 676 IPR036757 -
Trre13g04608 678 FunFam Os01g0740650 protein 295 525 - -
Trre13g04608 678 Gene3D - 96 295 - -
Trre13g04608 678 Pfam Transferrin receptor-like dimerisation domain 550 673 IPR007365 -
Trre13g04608 678 Gene3D - 528 678 IPR036757 -
Trre13g04608 678 Coils Coil 559 579 - -
Trre13g04608 678 SUPERFAMILY Zn-dependent exopeptidases 40 523 - -
Trre13g04608 678 CDD M28_PSMA_like 300 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04608 Trre-Chr13 53492433 53497852 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04608 K01301 - gmx:100818733 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04608 13 53492433 53497852 Trre13g04608 13 53492433 53497852 ECH