Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04605 ATGGCTATACAAGAATCAGAAACAAAGTTAGATCGGAGTCATACTGAATTCAAAAAGCTTCCCGGTAAAAGCAACCGGAATCGGTCATCATCCGGTGGCATTGTTGTGAGATTTTCCAGTTCCACATTTTTGCAGAAAGTGCAATCAAGTGAAATCGGTTCTCAGATAATGGTGAAAACAAATAAGAAGCACACAGGAAAATCTCCTGGTAAAGGAAGCGGTACTTCTCATTGCCTTGTCGATTCTCCAGCCTGTGATAATCAGCATGAGGATAGTGATTGGATTATAGTTAAAAAGCAGAGAGTCATCATTCTGGTTCCTGCACCTGAAAGATCCTCAACAGAAAATGAAGAGCCGAATCACATGCATCCTATGCCTCCTGTAACGTCAAGTAACCACGAGGAACTTCCCGAGGAGACACCTAATGAAAATCCTTCTTGTAGTGAACAAGAGAAGGCCATTTCATTAGCTGCTCAAAAGGAGATTCATACTGTGACAAGAGCTCCTCCTCCCTTATTACTCGAATCACCTTTGGCCAATCCACCACAGGTAGATCAAAGAATAGAATCAGAAAATCCGCATCAAGTGAGTAGTAGTTTGAAGTCCCAAAGATTAGTTGGAGTATCTAATACATCAAATGCTATAAAGCAGCCCAGAACATTACTTGCTCCAAAAAGGTTCTCCAACTTGGCAACTTTGAATCAAGGTCTGAGAGCATCAAATCTCCAGAGAAAGCTTGAAAGAGCTGGTGGGTTGAACAAGTGGCTGGCATCACTTGGACTGGAGCAGTTTGTAAGAATGTTTCAAGGAAAGATTATCAGTAAGTATCAGCTCGTGAATCTAACCATGAAAAAACTCAAGGATATGGGTGCCAGTGCAGTGGGACCTCGCAGGAAACTAATCCACGCCATGGACTGTGTTTGCCAGCCATATTGCTTTGAGGCATTATAG 951 0.4238 MAIQESETKLDRSHTEFKKLPGKSNRNRSSSGGIVVRFSSSTFLQKVQSSEIGSQIMVKTNKKHTGKSPGKGSGTSHCLVDSPACDNQHEDSDWIIVKKQRVIILVPAPERSSTENEEPNHMHPMPPVTSSNHEELPEETPNENPSCSEQEKAISLAAQKEIHTVTRAPPPLLLESPLANPPQVDQRIESENPHQVSSSLKSQRLVGVSNTSNAIKQPRTLLAPKRFSNLATLNQGLRASNLQRKLERAGGLNKWLASLGLEQFVRMFQGKIISKYQLVNLTMKKLKDMGASAVGPRRKLIHAMDCVCQPYCFEAL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04605 316 Pfam SAM domain (Sterile alpha motif) 252 306 IPR001660 GO:0005515
Trre13g04605 316 ProSiteProfiles SAM domain profile. 252 310 IPR001660 GO:0005515
Trre13g04605 316 MobiDBLite consensus disorder prediction 183 205 - -
Trre13g04605 316 SMART SAM_4 244 310 IPR001660 GO:0005515
Trre13g04605 316 MobiDBLite consensus disorder prediction 171 205 - -
Trre13g04605 316 MobiDBLite consensus disorder prediction 1 32 - -
Trre13g04605 316 Gene3D - 247 305 IPR013761 -
Trre13g04605 316 MobiDBLite consensus disorder prediction 58 79 - -
Trre13g04605 316 MobiDBLite consensus disorder prediction 58 72 - -
Trre13g04605 316 MobiDBLite consensus disorder prediction 110 150 - -
Trre13g04605 316 PANTHER SCP160 13 314 - -
Trre13g04605 316 MobiDBLite consensus disorder prediction 7 23 - -
Trre13g04605 316 CDD SAM_superfamily 252 303 - -
Trre13g04605 316 SUPERFAMILY SAM/Pointed domain 251 309 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04605 Trre-Chr13 53471524 53474616 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04605 - - psat:127125488 415.231