Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04603 ATGAAATTCGGGTGCACATTTGAACAGTACCTGGAGAAGGAGAAGGAGAAGGAGTTGTTGTTGGATGAGAATTGTGCTCATATTGAATATAACAGGTTGAAAACTGTGTTGAAGAGTTGTCAGAATTGTAAACATAACTCTTCTGATGATGATAAAGACCAGTTATGTCAATGTCAATCTTGCGAATTATGCGACCAGGAGTTCTTCTCCGAGTTGACGAAGGAAGCATCAGATATAGCAGGATACTTTAGTTCAAGAGTTCAGCATCTCCTTCACCTTCATATCGCAAAAGGACTGCACAGATATGTATTGCGTTTGCGCCACTGTTTTAAAAATGACAGGGATGCCCTTGTCCAAGAAGGGAAAATTCTAATCAAGTACATTACCATGAACGCAATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTGCATAGCTCTATGAATGGCGAGAATTTCAAATATAAGATGCAGGCTGAGCATATTGAACTTTTACACTCACCTTGGCTGATTGAATTGGGTGCTTTTTATCTGAATTCGAGTGGACTAGATGATTGTGCGCTTGATGGTATCCGTGGTCACTTTTCATGTGAATTTAATGTAACGAATGCTGTAATGATATTAAGTCTTCCCGATTCTATTAAGCTTGAGTATGATCTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAATCCATATGCATTGAGTTGTGGACACTTTTTCTGCAAATCGTGCGCTTGCTCTGCTGCATCTGTGATGACTTTCCAAGGCCTTAAAGCTGCAAGTCCAGAGTCAAAGTGTCCCATATGCAGAGAGGTAGGAGTTTATTCCAAGGCGGTACGAATGTTAGAACTCAATCTGCTTATGAAAAGAAGGTGCAAAGTCTATTGGAAAGAGAGACTAGTTAGGGAAAGAGTCGATGGGTTGAAGCAATCAAGAGAATTCTGGAATATGCAGTCCACATATGCAATTGGATTGCTGTAG 987 0.3951 MKFGCTFEQYLEKEKEKELLLDENCAHIEYNRLKTVLKSCQNCKHNSSDDDKDQLCQCQSCELCDQEFFSELTKEASDIAGYFSSRVQHLLHLHIAKGLHRYVLRLRHCFKNDRDALVQEGKILIKYITMNAIAMRKILKKYDKVHSSMNGENFKYKMQAEHIELLHSPWLIELGAFYLNSSGLDDCALDGIRGHFSCEFNVTNAVMILSLPDSIKLEYDLTCAICLDFVFNPYALSCGHFFCKSCACSAASVMTFQGLKAASPESKCPICREVGVYSKAVRMLELNLLMKRRCKVYWKERLVRERVDGLKQSREFWNMQSTYAIGLL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04603 328 ProSitePatterns Zinc finger RING-type signature. 238 247 IPR017907 -
Trre13g04603 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 324 IPR013083 -
Trre13g04603 328 ProSiteProfiles SPX domain profile. 1 156 IPR004331 -
Trre13g04603 328 CDD RING-HC_BAH1-like 213 286 - -
Trre13g04603 328 ProSiteProfiles Zinc finger RING-type profile. 223 272 IPR001841 -
Trre13g04603 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 326 IPR033326 -
Trre13g04603 328 SMART ring_2 223 271 IPR001841 -
Trre13g04603 328 Pfam RING-type zinc-finger 223 269 IPR027370 -
Trre13g04603 328 SUPERFAMILY RING/U-box 215 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04603 Trre-Chr13 53466262 53469512 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04603 K16275 - gmx:100781704 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04603 13 53466262 53469512 Trre13g04603 13 53466262 53469512 ECH