Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04602 ATGTCAAATTTCTTCAGCTCCTGGTTATGGCTTTCTCGTTTTCGTTCTTCATCTTCTTCCAAATACTTCTTCCACCGCACTCTCCATACTATCACCGCCACGCCGAACAAAACCGCACCAACCTCAAATCTCTTCAACTCACACAGATCAACTAATCATTGGACCACATGGTCAATTCCTTTCGCTCTCGCTCTCTCTGCTGGATCACTCTCTCTTCAACCTCATTTCGATAATTCCTTCTCTGACTCCTTTGACACCGATAACAGTGATGTAAAGATTGGGGGCAAAGGTAGCACACAATATGTTGTTAAGGGATCACAAAAAGAGTTCCCACAAGAGCTTCTCGAGGAGTTGAAAATCATCTGTGAGGATAACATATCACTTGATTATGACGAAAGATATATGCATGGAAAACCACAACACAGTTTTCACCAAGCTGTCAATATCCCAGATGCGATTGTTTATCCAAGATCTGAGGAGGAGGTCTCCAAAATTGTCAAATCATGCAACAATCATAAGATTCCTATTGTACCTTATGGAGGCGCTACATCAATCGAAGGTCACACTTTATCCCCCCATGGAGGGGTTTGTATTGACATGTCATCAATGAAAAGAGTAAAAGCATTGCATGTTGATGACATGGATGTGGTTGTTGAACCTGGAATTGGGTGGATGGAGCTTAATGAGTATTTGGAACCTTATGGCCTATTTTTTCCACTTGATCCAGGTCCTGGTGCAAGTATTGGAGGGATGTGTGCTACACGCTGCTCTGGTTCGTTAGCTGTGAGGTATGGAACTATGCGTGATAATGTCATCAGTCTCAAGGTAGTTCTTGCCAACGGAGATATTGTGAAGACTGCATCGCGGGCTAGGAAGAGTGCTGCAGGGTATGACCTGACCCGCTTGATGATTGGGAGTGAAGGAACTCTTGGTGTCATAACAGAAGTAACACTGCGGCTTCAGAAAATTCCCCAGTTTTCAGTGGTTGCAATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACGATGATGTCTGGAATACAGGTGTCAAGGGTAGAGCTATTGGACGAAGTTCAAGTCAAAGCTATTAATATTGCTAATGGGAAGAGTTTTCCTGAATGTCCAACTTTGATGTTTGAATTTATAGGAACAGAGGCATATGCACGGGAACAAACCCAGATTGTACGAAAAATTGTTTCTGAGCACAACGGCTCAGATTTTGTATTTGCAGAAGAACCTGAAGCCAAAAAAGAACTTTGGAAGGTAAGGAAGGAAGCACTCTGGGCTTGCTTTGCTTTGGAACCTAATAAGGAGGCAATGATTTCGGATGTATGTGTTCCTTTATCTCGTCTAGCCGATTTAATTTCAAGGTCTAAAAAGGAGCTGGATGCATCGCCACTGGTTTGCACAGTGATTGCCCATGCTGGCGATGGTAATTTCCACACAGTAATTCTATTTGATCCCACGAAAGAAGAAGAACGGAAGGAAGCAGAGAGACTCAACAATTTTATGGTTCATGCTGCCTTGTTGTTGGAAGGAACTTGTACCGGTGAACATGGTGTTGGCACCGGAAAAATGAAGTATCTTGAAAAAGAACTAGGAGTGGAAGCATTGAGGACAATGAAAAAAATAAAATCTGTCCTAGATCCTAACAATATCATGAATCCAGGAAAGCTCATCCCTCCCCATGTTTGTTTGTAA 1716 0.4277 MSNFFSSWLWLSRFRSSSSSKYFFHRTLHTITATPNKTAPTSNLFNSHRSTNHWTTWSIPFALALSAGSLSLQPHFDNSFSDSFDTDNSDVKIGGKGSTQYVVKGSQKEFPQELLEELKIICEDNISLDYDERYMHGKPQHSFHQAVNIPDAIVYPRSEEEVSKIVKSCNNHKIPIVPYGGATSIEGHTLSPHGGVCIDMSSMKRVKALHVDDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPQFSVVAMCNFPSVKDAADVAIATMMSGIQVSRVELLDEVQVKAINIANGKSFPECPTLMFEFIGTEAYAREQTQIVRKIVSEHNGSDFVFAEEPEAKKELWKVRKEALWACFALEPNKEAMISDVCVPLSRLADLISRSKKELDASPLVCTVIAHAGDGNFHTVILFDPTKEEERKEAERLNNFMVHAALLLEGTCTGEHGVGTGKMKYLEKELGVEALRTMKKIKSVLDPNNIMNPGKLIPPHVCL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04602 571 FunFam D-lactate dehydrogenase [cytochrome], mitochondrial 112 343 - -
Trre13g04602 571 SUPERFAMILY FAD-binding/transporter-associated domain-like 118 324 IPR036318 GO:0050660
Trre13g04602 571 PANTHER D-LACTATE DEHYDROGENASE 88 567 - -
Trre13g04602 571 Gene3D - 443 524 - -
Trre13g04602 571 ProSiteProfiles PCMH-type FAD-binding domain profile. 146 323 IPR016166 GO:0071949
Trre13g04602 571 FunFam D-lactate dehydrogenase mitochondrial 443 524 - -
Trre13g04602 571 Gene3D - 108 343 IPR016169 -
Trre13g04602 571 Pfam FAD linked oxidases, C-terminal domain 323 564 IPR004113 GO:0003824|GO:0050660
Trre13g04602 571 SUPERFAMILY FAD-linked oxidases, C-terminal domain 328 567 IPR016164 GO:0003824|GO:0050660
Trre13g04602 571 Gene3D - 525 565 IPR016171 -
Trre13g04602 571 FunFam D-lactate dehydrogenase mitochondrial 525 565 - -
Trre13g04602 571 Pfam FAD binding domain 150 286 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04602 Trre-Chr13 53454153 53463913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04602 K00102 - gmx:100803612 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04602 13 53454153 53463913 Trre13g04602 13 53454153 53463913 ECH