Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04591 ATGGATTCGGGATCTTGGAGTTCTTCTACCAAATCCCGATCCCCTTTCCCTGAACGCTTCCTTCAAAGAAAGAATTCTTCTCAGGATAACTTGGACAGGTTTATCCCAAATAGATCGGCGATGGATTTCGGTTACGCTCATTACATGTTGACGGAGGGTACAAAGGAAAAAGAAAATTCAACAGTGATGTCACCGTCTCGTACTGCCTACCAGAAACTTCTCGCCGAAGCCGCTAACATGAATGGCAGAACTAGAATCTTGGCCTTCAAGAATAAGCCTCCGACACCGGTCGAACTCATTCCTAGGGGAATTCTTTCACCTCCTCCTCAATCCAAAACCTCCAAACCCAAACGATGCATTCCTCAGACTTCTGAGAGGACTTTGGATGCCCCTGATATATTAGACGATTTCTACTTGAATTTATTAGATTGGGGTAGCGGTAATGTCCTTAGTATCGCCCTTGAAAATACCGTTTATCTCTGGAATGCTTCAGATAGTTCCACTTCGGAACTCGTCACTGTCGATGAGGAACATGGTCCTGTCACAAGTGTTAGCTGGGCTCCAGATGGTCGCCATTTAGCCGTTGGTTTAAACAATTCCCTTGTCCAGCTCTGGGATACAACTGCTAATAAACAGCTAAGGATATTGAAGGGTGGACACAGAGCAAGAGTGGGTTCACTGGCTTGGAACAATCATATTCTGACAACAGGAGGAATGGATGGTAAAATAGTGAACAATGATGTTAGAGTGAGATCTCACATGGTTGAAACTTACAGAGGACACAGCCAGGAAGTCTGTGGGCTCAAGTGGTCACTCTCAGGACAACAATTGGCTAGTGGTGGAAACGATAATGTTGTTCACATATGGGATAGGTCTGTGGTTTCTTCAAATTCACCTACCCGTTGGCTTCACAGGTTTGAAGAACACACAGCTGCAGTGAAGGCACTGGCTTGGTGTCCTTTTCAGGGTAATCTATTGGCTTCTGGTGGAGGTGGAGGTGATCATTGCATTAAGCTGTGGAACACACACACGGGTGCGAGATTGAATTCTGTTGATACAGGATCTCAAGTATGTGCTCTGCTATGGAACAAGAATGAGCGTGAGCTTCTTAGCTCACATGGTTTCACTGAGAACCAGCTTACCCTTTGGAAGTATCCTTCAATGGTGAAGATGGCGGAGCTCAACGGTCATACCTCGAGGGTGCTGTATATGACACAGAGTCCAGATGGGTGTACTGTTGCATCTGCAGCCGCGGATGAGACACTGAGATTTTGGAATGTCTTTGGAACCCCAGCAGCAGCATGCAAAGCAGCACCAAAGACATACAATGAGCCCTTTGCTAATTTCAGTCGTATCCGTTGA 1362 0.4604 MDSGSWSSSTKSRSPFPERFLQRKNSSQDNLDRFIPNRSAMDFGYAHYMLTEGTKEKENSTVMSPSRTAYQKLLAEAANMNGRTRILAFKNKPPTPVELIPRGILSPPPQSKTSKPKRCIPQTSERTLDAPDILDDFYLNLLDWGSGNVLSIALENTVYLWNASDSSTSELVTVDEEHGPVTSVSWAPDGRHLAVGLNNSLVQLWDTTANKQLRILKGGHRARVGSLAWNNHILTTGGMDGKIVNNDVRVRSHMVETYRGHSQEVCGLKWSLSGQQLASGGNDNVVHIWDRSVVSSNSPTRWLHRFEEHTAAVKALAWCPFQGNLLASGGGGGDHCIKLWNTHTGARLNSVDTGSQVCALLWNKNERELLSSHGFTENQLTLWKYPSMVKMAELNGHTSRVLYMTQSPDGCTVASAAADETLRFWNVFGTPAAACKAAPKTYNEPFANFSRIR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04591 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Trre13g04591 453 ProSitePatterns Trp-Asp (WD) repeats signature. 413 427 IPR019775 -
Trre13g04591 453 Pfam Anaphase-promoting complex subunit 4 WD40 domain 173 231 IPR024977 -
Trre13g04591 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 206 - -
Trre13g04591 453 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 19 435 IPR033010 GO:0010997|GO:0097027|GO:1904668
Trre13g04591 453 SMART WD40_4 299 341 IPR001680 GO:0005515
Trre13g04591 453 SMART WD40_4 209 247 IPR001680 GO:0005515
Trre13g04591 453 SMART WD40_4 167 206 IPR001680 GO:0005515
Trre13g04591 453 SMART WD40_4 387 426 IPR001680 GO:0005515
Trre13g04591 453 SMART WD40_4 251 290 IPR001680 GO:0005515
Trre13g04591 453 SUPERFAMILY WD40 repeat-like 127 427 IPR036322 GO:0005515
Trre13g04591 453 CDD WD40 156 426 - -
Trre13g04591 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Trre13g04591 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 427 IPR001680 GO:0005515
Trre13g04591 453 MobiDBLite consensus disorder prediction 1 33 - -
Trre13g04591 453 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Trre13g04591 453 Pfam WD domain, G-beta repeat 391 426 IPR001680 GO:0005515
Trre13g04591 453 Pfam WD domain, G-beta repeat 303 341 IPR001680 GO:0005515
Trre13g04591 453 Gene3D - 83 429 IPR015943 GO:0005515
Trre13g04591 453 MobiDBLite consensus disorder prediction 107 121 - -
Trre13g04591 453 MobiDBLite consensus disorder prediction 100 121 - -
Trre13g04591 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Trre13g04591 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 290 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04591 Trre-Chr13 53343941 53345765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04591 181 370 Miscellaneous Gene Families AT5G08390 27.979 8.26e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04591 K03363 - gmx:100784841 709.138