Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04580 ATGGAATATTCCAATTCCATCTATGGTCTCTTCTTCTTCCTTTTCCTTCTTCCTATCCTTTCCGCATTCCCTCACAATTCCACCTCAACCGTTCAGATCAACTCTAACTCCATCCTCGTCGCTCTTCTAGATTCTCATTACACCGAACTCGCTGAACTCGTTGAGAAAGCTCTTCTCCTTCAGAAACTAGAAGAAGCTGTTGGTAATCACAATATCACAATCTTCGCTCCCAGAAATCAAGCTCTAGAACGTGACCTAGATCCTGAATTCAAAAGATTTCTTCTCGAACCGCGGAATCTTAGGTCACTTCAAACGCTTTTGATGTCTCACATTCTTCCTTCACGTATTGCTTCTCATCATTGGCCGGAAAACGACCGCCGTCATCAGACACTCTCCAACCACCGTCTTCATTTAACAAGAAGCCCTTCCGGTAACAAAATTGTCGATTCAGCTGAGATCCTCCGCGCTGACGATGTTATTCGCCCCGACGGTGTCATCCATGGTATCGAACGTCTCATTGTACCTCGCTCCGTACAAGAAGATTTCAACCGGAGAAGAAATCTTCGTGATATATCAGCGATTCTCCCGGAAGGAGCACCGGAGGTAGATCCAAGAACAAACCGGTTAAAAAAACCAGCACCAGTACCTGCCGGAGCTCCACCGGTGCTTCCAATCTACGACGCATTAGCACCAGGTCCATCTCTAGCTCCGGCGCCGGCACCAGGACCGGGAGGACCACGTCATCACTTTAACGGAGAACGTCAAGTGAAGGATTTCATCCAAACTCTTGTTCATTACGGTGGTTACAACGAAATGGCGGATATTCTTGTTAACCTAACGTCGCTTGCAACGGAAATGGGTCGTTTAGTTTCTGAAGGTTATGTTCTAACCGTTTTGGCTCCAAACGACGAAGCAATGGCGAAATTAACGACCGATCAATTGAGTGAACCAGGTGCACCGGAACAGATCATATACTATCATATAATTCCTGAGTATCAAACGGAGGAGAGTATGTATAACGCCGTTAGGAGATTTGGGAAAATTAGTTACGATACACTCCGTTTGCCTCATAAGGTTGTTGCTCAGGAATCTGACGGTTCCGTTAAATTCGGTCACGGTGATTCTTCTGCTTATTTGTTTGATCCTGATATTTACACCGACGGGAGAATTTCCGTTCAGGGTATTGACGGTGTTCTTTTACCTCCGGAGGAAGAGAAAGAAGATCAATCATCATCCTCAATTCGCCGTGCAAAAATTCCACTTGTTAAAGTTGCTACTAAACCAAGGAGAGGGAAATTGCTGGAACTCGCATGTAGCATGGTTGGATCTTTTGGAAGAGTCTGCTCATGA 1350 0.4556 MEYSNSIYGLFFFLFLLPILSAFPHNSTSTVQINSNSILVALLDSHYTELAELVEKALLLQKLEEAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPSRIASHHWPENDRRHQTLSNHRLHLTRSPSGNKIVDSAEILRADDVIRPDGVIHGIERLIVPRSVQEDFNRRRNLRDISAILPEGAPEVDPRTNRLKKPAPVPAGAPPVLPIYDALAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIQTLVHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKISYDTLRLPHKVVAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLLPPEEEKEDQSSSSIRRAKIPLVKVATKPRRGKLLELACSMVGSFGRVCS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04580 449 ProSiteProfiles FAS1/BIgH3 domain profile. 256 399 IPR000782 -
Trre13g04580 449 Gene3D FAS1 domain 275 402 IPR036378 -
Trre13g04580 449 ProSiteProfiles FAS1/BIgH3 domain profile. 34 173 IPR000782 -
Trre13g04580 449 Pfam Fasciclin domain 281 401 IPR000782 -
Trre13g04580 449 Pfam Fasciclin domain 46 175 IPR000782 -
Trre13g04580 449 SUPERFAMILY FAS1 domain 33 176 IPR036378 -
Trre13g04580 449 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 20 448 IPR044654 -
Trre13g04580 449 FunFam Fasciclin-like arabinogalactan protein 16 251 402 - -
Trre13g04580 449 Gene3D FAS1 domain 38 175 IPR036378 -
Trre13g04580 449 SMART fasc_3 73 176 IPR000782 -
Trre13g04580 449 SMART fasc_3 297 402 IPR000782 -
Trre13g04580 449 SUPERFAMILY FAS1 domain 235 403 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04580 Trre-Chr13 53293280 53295601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04580 - - gmx:100818575 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04580 13 53293280 53295601 Trre13g04580 13 53293280 53295601 ECH