Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04573 ATGACCCGATTGACGGAGAAGCTCCGTTTATCTTCCTTGTTCATCAAACCGACCCGTTTTCTCTCTCTTCTTTCTCTCTCTACTCTCCATCATCTCTGCAACTCCCTTACTCGTTTCTTCTTCTCCCAAACCCTACCTTTCTTCTCCATGGACAACAACAACAACAACAATCTCTTCTCCGATAACATCGATTACTTCGACGACGACTTCGATTCCTCTTACTCTCTCCGTCCTAACCGTCGTTTACTTCAACAAGATTACCGCGATTTCTCCGTTGAGAAAGTTTACTTGCTTCCCTATAGGTGGTGGATTGATGCAGAAGGTGAAGGTGATCGCGTGGAAGGTGTTTTGTATACAGTTTGTTCGAATTTTGATTCTGAGTCTGAATTTTTGCTTCATTTGAAGAAGGAAGAGGATCGTGAGAAGATTAAGAGTTTGGAGGTAGGTGTTTCAGGTCGTCATTATGCTTTGGTTCCTGAAGGACTATGGTTGCGTGCCCTCAAACGGTATAATGATTTTAATAATGCAGTGAAGGATTTTGGGAGAATCTTCTATGAAGAAGAGGGTTTGCTAGATTTGTTCCCCTTGCAACTTAGGATATATGTTTCATGGGAAACCAGTTCACTTGCAGCAAAGATAAGCCAAGAGGAAAATGTGCCTGACTTCTACAAGAAAGCTTGTGACATTTTCGATTCTGCTTATAACCCTCTGTATATTTGGGACTTCTCTGGGCAGACAACCCAGCTTTTAGTAAATGACAATGCTAGGGTGCCAAATGATTCTCTTGGTCAACCTGGAAAAGAGGTTCTTCTGGAGTTACAAGTTCACGGACTTTCAGATTCAATGAGGGGTAGTCAGAGCAATGGGATGATTTCAGATAGCTCTCAGATGGAATGTTCTTCTGACGGTGACCCTGTTACGATGAATGGAAGCACTAGCAATGTTATCCCTTACGTAACAGCAAACAACTATTTTCAAGACAGTAGCTATCGAGCAGTTCGGTCTTTGGGCTTGACAGGACTGCATAATCTTGGAAATACCTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGTGATTATCGTAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTTAGAACGTTGTGGGTTCCTGGAGCATCACCTGTGGCACCAAGAATGTTCAAGATGAAACTATCTAACTTTGCTCCTCAGTTTAGTGGTTATATGCAACATGATTCTCAAGAACTGCTTGCTTTTTTGTTGGATGGACTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGACGCAGATGGCCGTCCAGATGGAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCAGTAGTAGTTGATTTGTGCCAAGGCCAGTTCCGGTCAACATTGATTTGCCCTTTTTGCAAGAAGGTTTCTATCACCTTTGACCCTTTTATGTACCTATCTCTGCCATTACCTTCTTCAACGATACGGACCATGACTGTGACAATCATGAGTACTGATGGGATCACATTGCCTTCTGCAATTACTGTAACAGTGCCTGAATGTGGAACACTTAATCATCTTATTGGGGCCTTAACTGCTGTTTGTTCTCTGAGAGATGATGAAACCCTCATGGTGGCTGAGATATACAAGTGTAAGATTTTTCGGGTATTGGAGGCATCTGACTCATTAGCTGATATTAGAGATCAAGACACGCTTGTTGCTTACCGAGTGCAGAAGTATACTGAAGATAGCATCTTGATTGTTTTCAGCCATGAACGTTTGGTGGAAAGTTACGCGAAGGGAAGGTTTGAAAATAGACTGTTTGGTATTCCAGTTGTAACAAGTCTGCCTGGTATTTCTTGCGGAAGCGATTTTCATAGGGAGTTTCTGAATTTAATCAATCCATTTCTGATGCAAAACACTGAAGAAACAATAGATGAATATGATAAGGATGACAGTGTTGTTGTTGATGATGATTGTACTACAAAACCAAATGAAGTTGATGAATCAGGCGAAACTAATAACTCTGAAGCAATAGAAAGTGATGCAGTCTCCAACAGCGGAGCAGAGGATGACATACATTTGGGGACTGGCTTTGAATTCCATTTAATGCTTTCTGGGAGACTAACTGACATTAAGATAACATCGAATGAACCATTACCTGTCGCAATGTTGTCCAGAAAGCTGGAGCTATTTGTCGTATGGTCAGATGATATGCTTAAAAAGTATGACACGAACCTGCTTGGTTCATTGCCCGAGGTTTTCAAGCCCCAATTATTCACCAAGAGAACACAAGAATCAGTATCTATTTACAAGTGCCTGGAAGCCTTCTTGAGAGAGGAACCTCTTGGGCCTGAAGACATGTGGTACTGTCCTACCTGCAAAGAACCCCAGCAAGCAACTAAAAAGTTGGATCTTTGGAGATTGCCTGAAATTCTTGTTGTTCATTTGAAGAGGTTCTCGTACAACCGATACTTCAAGAACAAGCTGGAAACTTTCGTTGACTTCCCAATTAATGATCTGGATTTGTCAACTTATGTTGCTAACAGGAGTTATCCATCTCCTAACTGCTATATGTTGTATGCAATTATTTGTCACTACGGCGGATTAGGAGGAGGTCACTATACAGCGTTTGTCCGTTATGGCCATGATAAATGGTATGAGTTTGATGATAACAGAGTTTCGCATGCTGATGAAGAGATGATTAAGACTCCTGCTGCTTATGTTCTATTCTACAAGAAAGTTTAG 2829 0.4136 MTRLTEKLRLSSLFIKPTRFLSLLSLSTLHHLCNSLTRFFFSQTLPFFSMDNNNNNNLFSDNIDYFDDDFDSSYSLRPNRRLLQQDYRDFSVEKVYLLPYRWWIDAEGEGDRVEGVLYTVCSNFDSESEFLLHLKKEEDREKIKSLEVGVSGRHYALVPEGLWLRALKRYNDFNNAVKDFGRIFYEEEGLLDLFPLQLRIYVSWETSSLAAKISQEENVPDFYKKACDIFDSAYNPLYIWDFSGQTTQLLVNDNARVPNDSLGQPGKEVLLELQVHGLSDSMRGSQSNGMISDSSQMECSSDGDPVTMNGSTSNVIPYVTANNYFQDSSYRAVRSLGLTGLHNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRTLWVPGASPVAPRMFKMKLSNFAPQFSGYMQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDGEVAEEYWRNHLARNDSVVVDLCQGQFRSTLICPFCKKVSITFDPFMYLSLPLPSSTIRTMTVTIMSTDGITLPSAITVTVPECGTLNHLIGALTAVCSLRDDETLMVAEIYKCKIFRVLEASDSLADIRDQDTLVAYRVQKYTEDSILIVFSHERLVESYAKGRFENRLFGIPVVTSLPGISCGSDFHREFLNLINPFLMQNTEETIDEYDKDDSVVVDDDCTTKPNEVDESGETNNSEAIESDAVSNSGAEDDIHLGTGFEFHLMLSGRLTDIKITSNEPLPVAMLSRKLELFVVWSDDMLKKYDTNLLGSLPEVFKPQLFTKRTQESVSIYKCLEAFLREEPLGPEDMWYCPTCKEPQQATKKLDLWRLPEILVVHLKRFSYNRYFKNKLETFVDFPINDLDLSTYVANRSYPSPNCYMLYAIICHYGGLGGGHYTAFVRYGHDKWYEFDDNRVSHADEEMIKTPAAYVLFYKKV 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04573 942 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 340 355 IPR018200 GO:0004843|GO:0006511
Trre13g04573 942 Gene3D Cysteine proteinases 662 942 - -
Trre13g04573 942 CDD Peptidase_C19R 795 940 - -
Trre13g04573 942 MobiDBLite consensus disorder prediction 281 304 - -
Trre13g04573 942 Gene3D Cysteine proteinases 323 578 - -
Trre13g04573 942 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 339 942 IPR028889 -
Trre13g04573 942 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 280 941 - -
Trre13g04573 942 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 885 902 IPR018200 GO:0004843|GO:0006511
Trre13g04573 942 MobiDBLite consensus disorder prediction 685 713 - -
Trre13g04573 942 Pfam Ubiquitin carboxyl-terminal hydrolase 339 939 IPR001394 GO:0004843|GO:0016579
Trre13g04573 942 MobiDBLite consensus disorder prediction 694 710 - -
Trre13g04573 942 SUPERFAMILY Cysteine proteinases 337 941 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04573 Trre-Chr13 53240331 53248135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04573 796 942 Miscellaneous Gene Families AT4G31670 33.333 3.24e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04573 - K21343 mtr:25499505 1512.28