Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04564 ATGGATCCGGCGATGACGTCACTCGGACAAATGCTACTTGAAGAAATCACACCGGTTGTTATGGTCCTTTCTACTCCTTCCGTCGAAGAAACTTGCTTAAAAAACGGATTATCCTTTCTTCAGATGCTCACTCCGTTTTGCTCTTTCAACAACATCGACGTTCCAGTGAGAACCGCTAGTGATCAACCTTATCGCATTCATAAGTTCAAATTGCGTCTCTCCTATGGTTCCAATGTTAGGAAGCCTGATTTGAAGGTAGCTGAAGAGCAATTGATGCAAGTTATCACAGACTCGGGGGAGAAAGTGTTTTCGGAGTTGTGCTCAGATGCATCGGAAATTAATCATGAACATGCGAGCTCTGAAGACAGAGATACACCATCCTGGTTTCAGTTTTTCAATAAAGAGCTTGTCCGCATGGCTTCCTTTTCAGACCATGAAGCTTTTGACCATCCCGTGGCTTGTCTTTTAGCCGTTTCTTCAAAAGATGAACATCCAGTTAGCAGGTTTATCGACCTTTTTAATACCAACAAGCTTCCTTCCCTTCTAAAAGATGGTGCGATGGATCCAAAGATTTTAAAGCATTACTTGTTAGTGCATGACAATCAAGATGGCTCCGCAGACAGAGCAAATAAAATATTGACAGAAATGAGGAATACATTTGGTTCAAGTGACTGCGTGCTGCTTTCTGTAAATTCTTCCCAAGATGCTCCAATCAAGCATCAAGATAATCCTTGGGCTTCACAAATATGTGATGCCTCACCTAATCAAGATCTTGGTTGCTTTCTTAACATTGATGATATCAACGAGATCAAAGATTTAATGCAAGATTTATCATCTAAACACATCATTCCTAACATGGAGCAAAAAATCCGTGTGCTCAATCAACAGGTTTCTGCAACGCGTAAAGGTTTTAAAAACCAAATAAAGAATTTATGGTGGAGAAAAGGGAAAGAAGATGGTGTAGATTCTCTTAATGGTCCTACGTATAACTTTAACTCAATTGAATCCCAGATTCGAGTTTTGGGTGACTATGCTTTCATGTTACGAGATTATGAACTTGCCTTGTCAAACTATCGCCTAATTTCGACAGATTACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTTGGATCAATCAAGAAAAGAAGCTGAATATTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGATTATTGGGTCAGCAAAATGCTACACGATGTGGTCTGTGGTGGATAGAAATGTTGAAGGCACGAGACCTATTTAAGGAGGCAGCTACAGTTTACTTTCGTATTTGTGGTGAGGATATCCTACACTCTGCTGTGATGCTTGAACAAGCATCATACTGTTATTTATTGTCTAAACCCTCCATGTCACGCAAATATGGATTTCATCTAGTTCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAGCATGCAATTCGAACATACAGAAGTGCCCTTTTGGTTTTTAGAGGAACCACTTGGAGTTATATCAATGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGATGTAGCTGTCAAACATATGACAGAAATTTTGGCCTGTAGTCACCAGTCCAAGACGACACAAGAATTATTCCTAGGCGACTTTCTTCAAGTTGTGGAGAAAACAGGGCGCACATTTGAGGTAACAAAACTTCAATTGCCTGTGATCAACATCTCTTCACTCAAGGTCATCTTTGAAGATCATCGAACTTTTGGATCACCTTCAGCTGTTAACACTAAAGAAGGCTTGTGGCATTCTTTGGAGGAAGACATGATACCATCATTTACTGCTGCCAAGACTAATTGGTTGGAGTTGCAATCAAAGCTTATCTCAAAAAAGCAGAGTCAATCAAATGTTTGTGTTGCAGGAGAAGCTGTGAAGGTTAATATTGAATTCATAAACCCTCTGCAAATTACAATTCCTGTATCTGGTGTTACACTTATATGCAAATATTCTACTAGTACCGAGGAACTTACATCAGATGCAAATGAATTGAGTGTGAAGACTGATAATGAAATTGACCACTTCCGGGATACGAGCTCATACAATTCCTCTTTTTTAGTATCTGAGGTTGATTTCTCACTAGGAGGTGGTGAAACTACGATGGTTCAACTATCAGTGACTCCCAAGGAAGTAGGTACTCTTGAAATTCTTGGTGTTCGATGGAAACTATCCGGTACAATAGTTGGCTTTCACAACTTTGAGTTGAGCCACCCGAAGAAGAATATTGTAAAAGGAAGAAGGAAAGCAAAGCAGTCGCCCAATGAGAAATTTAAATTTATGGTGATCAAGAGCATACCCAAGATTCAGGGTTCTGTCCAATCTTTACCTGGAAAAGCATATGCTGGAGATTTACGGCAACTTATGCTGGAGTTGAGGAATCCATCAGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCACCCTAGATTCCTGATTATTGGGAATCAAGAAAATGTTAAATTAGAGTTTCCTGGTTGCTTAACAAAAAAGACAGATTCAGTGCAAAGTGGTGCACATGCTAATCCTAATATCATGTCTGAAACAGTCTTTTCGTTTCCGACGGACACTTCAATTCAAGGTGAAACACCCTTATCGTGGCCTCTTTGGTTTAGGGCTGCCGATCCTGGTGATATTTCTCTTTATATGAGCATTTATTATGAGATTGAGGATATATCCAGTGTCATTAGATATCGCACTCTTCGCTTGCATTACAATGTGCAGGTATTACCATCATTAGATGTCTCATTTCAAATCAGTCCTTCTCGATTAAGAATACATGACTTTCTTGTTCGATTGGATGTTATTAACAAGACAAGCTCAGAAAGTTTCCAAGTTTATCAGTTGTCATCTATTGGGCATCACTGGGAAATATCATTACTTCAACCTCCTGATGCTATTTTCCCTTCGCAAACGCTGATGGCTGGTCAAGCCATATCATGTTTCTTCACATTGAAGAATTCAAGGAGATTATCGGCATTGGAACACAACATATCTACCATGCCTCTCGGAAGTGACGTGTTATTGGTTCCTCAATGCAGTCAGGATTTAGTTTACAATACAAACAATGTACCTCTGGTCAATTTCCACTATTATGAAAGATTGCAGCAGAAAGTGTTACACGAGGATCTAGGTGACTTAAATACCATTGATTTGGTGTTGATCTCTCGGCCTCTCAACAGTAGTAGCACCAGTCCTGGTTTATCCGATCCTCCTCATGTTATTACCTCTAGCACGGGCCCCATTTCATGGCTAGTGGATGGACCTCAAACCTTGCATCATGACTTCTCTGCATCCTTCTGCGAAATAAATCTTAAGATGCATCTTTACAATTCATCCGACGCCACTGCTTTTGTGCACATTGACACCACAGATTTTGATGGTAGTGGTGGACATGTGAATAGTGTGAACGCGATTCAATCAGCAACTCCTGATAACCAAGCAGGATGGCATGATGTCACCCCAGTGAATGAAATCAAGGTAACTCCCAATGCTCTCGAGACCCAACCTGGAAAGGCACTATTGTTGGAAAGTGTTTCCCCATACATTTGGTCTGGATCAAGCTCGACCAATATCCACCTTGAGCCCTTGTCCTCCGCAGAAGTTCCTCTTCAGATCTGTGTCTTCTCTCCAGGGACATATGACCTGTCAAATTACGTTTTGAGTTGGAAACTTCCATCCCAAGGTCTGGGAGACAGTGATGAAACGAAGCAGCATTCAGGCAAGTGCCAGGGCTATAAATACTTTTTGACTGTGCTTCAGTCCGCTTGA 3846 0.4054 MDPAMTSLGQMLLEEITPVVMVLSTPSVEETCLKNGLSFLQMLTPFCSFNNIDVPVRTASDQPYRIHKFKLRLSYGSNVRKPDLKVAEEQLMQVITDSGEKVFSELCSDASEINHEHASSEDRDTPSWFQFFNKELVRMASFSDHEAFDHPVACLLAVSSKDEHPVSRFIDLFNTNKLPSLLKDGAMDPKILKHYLLVHDNQDGSADRANKILTEMRNTFGSSDCVLLSVNSSQDAPIKHQDNPWASQICDASPNQDLGCFLNIDDINEIKDLMQDLSSKHIIPNMEQKIRVLNQQVSATRKGFKNQIKNLWWRKGKEDGVDSLNGPTYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFNTYLKLGLLGQQNATRCGLWWIEMLKARDLFKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMSRKYGFHLVLSGEQYKKCDQIKHAIRTYRSALLVFRGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMTEILACSHQSKTTQELFLGDFLQVVEKTGRTFEVTKLQLPVINISSLKVIFEDHRTFGSPSAVNTKEGLWHSLEEDMIPSFTAAKTNWLELQSKLISKKQSQSNVCVAGEAVKVNIEFINPLQITIPVSGVTLICKYSTSTEELTSDANELSVKTDNEIDHFRDTSSYNSSFLVSEVDFSLGGGETTMVQLSVTPKEVGTLEILGVRWKLSGTIVGFHNFELSHPKKNIVKGRRKAKQSPNEKFKFMVIKSIPKIQGSVQSLPGKAYAGDLRQLMLELRNPSEFPVKNLKMKISHPRFLIIGNQENVKLEFPGCLTKKTDSVQSGAHANPNIMSETVFSFPTDTSIQGETPLSWPLWFRAADPGDISLYMSIYYEIEDISSVIRYRTLRLHYNVQVLPSLDVSFQISPSRLRIHDFLVRLDVINKTSSESFQVYQLSSIGHHWEISLLQPPDAIFPSQTLMAGQAISCFFTLKNSRRLSALEHNISTMPLGSDVLLVPQCSQDLVYNTNNVPLVNFHYYERLQQKVLHEDLGDLNTIDLVLISRPLNSSSTSPGLSDPPHVITSSTGPISWLVDGPQTLHHDFSASFCEINLKMHLYNSSDATAFVHIDTTDFDGSGGHVNSVNAIQSATPDNQAGWHDVTPVNEIKVTPNALETQPGKALLLESVSPYIWSGSSSTNIHLEPLSSAEVPLQICVFSPGTYDLSNYVLSWKLPSQGLGDSDETKQHSGKCQGYKYFLTVLQSA 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04564 1281 Gene3D Tetratricopeptide repeat domain 329 554 IPR011990 GO:0005515
Trre13g04564 1281 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 636 829 IPR013935 -
Trre13g04564 1281 PANTHER TRANSPORT PROTEIN TRAPP 3 1280 IPR024420 -
Trre13g04564 1281 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 187 518 IPR024420 -
Trre13g04564 1281 SUPERFAMILY TPR-like 428 550 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04564 Trre-Chr13 53111380 53127713 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04564 K20305 - gmx:100809666 2155.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04564 13 53111380 53127713 Trre13g04564 13 53111380 53127713 ECH