Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04559 ATGGATATTGAGTTAACAAATCAAAAAAAGAAGGTTGGAATTTTCTCACGTTTGATTGGATTCTTCAAGGATTTGCCTATGAACTTCAAGTCCAAAGTTATCAATGCTAAAAATAGTGTTAAGAAGATTGGAAAAGATGATCCTAGAAGAATAATTCACTCATTGAAAGTTGGGTTTGCTCTTACAGTAGTGTCATTGTTTTACTATTCAAGGCCACTTTATAATGGCTTTGGAGTTGCTGGAATGTGGGCAGTTCTTACTGTTGTAGTAGTATTTGAATTTACTGTAGGTGCAACCCTTAGTAAAAGTATAAATAGAGGATGTGCTACATTAATAGCTGGTGCTTTAGGGGTTGGAGGGCATCATTTAGCCACTACTGTTGGAGAAAGAGGAGAAGCTTTTGTCCTAGGGACCCTTGTCTTCATTCTAGCTGCAGGGGCAACTTTTTTAAGATTTGTTCCAAAGATCAAGGCAAGATATGACTATGGGATGGTGATATTTATATTGACATTTTGTTTGGTTACTGTCTCGGCGTACAGAGTGGAAGAACTTCTTGAACTTGCACATCAAAGACTTTCAACAATTATAATAGGAGCATCAACTTGCATGGTCATTTCCATATTTGTTTGTCCTGTTTGGGCAGGTGCAGATCTTCATAAGTTGGTAGCTTCCAACATAGAAAAGCTAGCAAATTACCTTGAAGGATTTGAAGGTGAATATTTTCACTCATTAGAGGATAAAGAAAAATCTAAGTCACTTTTGCAAGGATATAAAAGTGTTCTCAATTCAAAAGCAATTGAAGAGTCTTTGACAAATTTTGCAAGGTGGGAACCGGGACATGGTGGTTTTAGCCTTCGCCATCCTTGGAAGCAATACTTGAAAATCGGAGTACTTGTCCGCGAATGTGCATACAAGATTGAAACCCTAAACACATACCTTAACCCTGAAATCCAAACTTCTTTGGAATTCAAGTGTAAAATTCAAGAACCATGCACAAAGACGAGTTCAGAATCCAACAAAGCATTAAAGGCAATATCATCATCAATGAAAACAATGACAAATCCATTAGCAGCTAAAAATCACATAGAGAATTCAAAAACTGCAATTGAAGAACTCAAAGTTGCACTAGAAGTCATTTCTTTAGAGGATGTTGAACTTCTAGCTATAATTCCAGTTGCAACAGTTGCTGCAATACTTGAAGAAATCACTTTTTCTGTGGAGAAAATCTATGATTCTGTTTCTGAGCTTTCTCATTTAGCACATTTCAAGAGTGTAGAGCCCAATGTCTCACCAGAAAAGCCACCTCTACTTCATAGAGGAATCATAAAACCTGTTGTGGACATTGATAATAACGCGCCGCCGCATGTTGAAATCACAATCCAAGATTTATGTACAGAGTCACCGGAAAAAGCTCAAAAAGCCACCGCCGAAATCCTTCAAACATAA 1446 0.3728 MDIELTNQKKKVGIFSRLIGFFKDLPMNFKSKVINAKNSVKKIGKDDPRRIIHSLKVGFALTVVSLFYYSRPLYNGFGVAGMWAVLTVVVVFEFTVGATLSKSINRGCATLIAGALGVGGHHLATTVGERGEAFVLGTLVFILAAGATFLRFVPKIKARYDYGMVIFILTFCLVTVSAYRVEELLELAHQRLSTIIIGASTCMVISIFVCPVWAGADLHKLVASNIEKLANYLEGFEGEYFHSLEDKEKSKSLLQGYKSVLNSKAIEESLTNFARWEPGHGGFSLRHPWKQYLKIGVLVRECAYKIETLNTYLNPEIQTSLEFKCKIQEPCTKTSSESNKALKAISSSMKTMTNPLAAKNHIENSKTAIEELKVALEVISLEDVELLAIIPVATVAAILEEITFSVEKIYDSVSELSHLAHFKSVEPNVSPEKPPLLHRGIIKPVVDIDNNAPPHVEITIQDLCTESPEKAQKATAEILQT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04559 481 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 27 426 - -
Trre13g04559 481 Pfam Aluminium activated malate transporter 42 417 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04559 Trre-Chr13 53021950 53024397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04559 1 462 Miscellaneous Gene Families AT3G11680 57.325 4.35e-176 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04559 K25841 - gmx:100170704 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04559 13 53021950 53024397 Trre13g04559 13 53021950 53024397 ECH